Variant report

Variant	rs7865398
Chromosome Location	chr9:73220733-73220734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:73216054..73218169-chr9:73220348..73222412,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10735599	0.88[CEU][hapmap]
rs11142496	0.86[ASW][hapmap];0.88[CEU][hapmap]
rs11142509	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11142512	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11142513	0.91[EUR][1000 genomes]
rs3829095	0.90[EUR][1000 genomes]
rs58391509	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72718987	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7862783	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73206600-73227800	Weak transcription	Aorta	Aorta
2	chr9:73213600-73224600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73215800-73236800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:73216000-73227600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:73216600-73222400	Weak transcription	Lung	lung
6	chr9:73216800-73221800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:73217000-73222200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:73217000-73230200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:73217400-73220800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:73217400-73222000	Weak transcription	Psoas Muscle	Psoas
11	chr9:73217400-73222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:73217400-73223000	Weak transcription	NHLF	lung
13	chr9:73217400-73231200	Weak transcription	Fetal Brain Female	brain
14	chr9:73217400-73233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:73217400-73242400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:73217600-73222000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:73217600-73224000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:73217600-73224400	Weak transcription	Brain Angular Gyrus	brain
19	chr9:73217600-73224600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:73217600-73224600	Weak transcription	Ovary	ovary
21	chr9:73217600-73236400	Weak transcription	Fetal Kidney	kidney
22	chr9:73217800-73222400	Weak transcription	Left Ventricle	heart
23	chr9:73217800-73224200	Weak transcription	Fetal Heart	heart
24	chr9:73217800-73224400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:73217800-73224600	Weak transcription	Brain Substantia Nigra	brain
26	chr9:73217800-73228600	Weak transcription	Brain Anterior Caudate	brain
27	chr9:73218000-73220800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:73218000-73222000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:73218000-73223400	Weak transcription	Right Atrium	heart
30	chr9:73218000-73224400	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:73218000-73228400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:73218000-73229800	Weak transcription	Fetal Brain Male	brain
33	chr9:73218200-73222400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:73218600-73224000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:73218600-73224000	Weak transcription	Osteobl	bone
36	chr9:73219400-73223600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:73219800-73221800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:73219800-73222600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:73219800-73228000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:73220400-73227600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:73220600-73221200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr9:73220600-73222400	Enhancers	Placenta Amnion	Placenta Amnion

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