Variant report

Variant	rs11153647
Chromosome Location	chr6:117399688-117399689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117398297..117400947-chr6:117402400..117403953,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12528792	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13192555	0.95[ASN][1000 genomes]
rs13214495	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1508303	0.87[ASN][1000 genomes]
rs2456997	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36008353	0.95[ASN][1000 genomes]
rs3851204	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488839	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs494211	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs514239	0.80[ASN][1000 genomes]
rs569578	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs571392	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs591538	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs607164	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62426712	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62426713	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62430529	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62430538	0.89[ASN][1000 genomes]
rs625602	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs652308	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6568971	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs666591	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7762412	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117399200-117400800	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr6:117399400-117400400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:117399600-117400000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:117399600-117400600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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