Variant report
| Variant | rs7762412 |
|---|---|
| Chromosome Location | chr6:117438121-117438122 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11153647 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12528792 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13192555 | 0.90[ASN][1000 genomes] |
| rs13214495 | 0.97[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1508303 | 0.94[ASN][1000 genomes] |
| rs2456997 | 0.90[EUR][1000 genomes] |
| rs36008353 | 0.88[ASN][1000 genomes] |
| rs3851204 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs488839 | 0.85[EUR][1000 genomes] |
| rs494211 | 0.85[EUR][1000 genomes] |
| rs514239 | 0.88[ASN][1000 genomes] |
| rs569578 | 0.85[EUR][1000 genomes] |
| rs571392 | 0.84[EUR][1000 genomes] |
| rs591538 | 0.90[EUR][1000 genomes] |
| rs607164 | 0.90[EUR][1000 genomes] |
| rs62426712 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62426713 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62430529 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs62430538 | 0.97[ASN][1000 genomes] |
| rs625602 | 0.85[EUR][1000 genomes] |
| rs652308 | 0.85[EUR][1000 genomes] |
| rs6568971 | 0.90[EUR][1000 genomes] |
| rs666591 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948766 | chr6:117407275-117641016 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2758076 | chr6:117431224-117627275 | Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2759465 | chr6:117431224-117627275 | Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:117432200-117438600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr6:117435600-117440200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
