Variant report

Variant	rs11155078
Chromosome Location	chr6:139919106-139919107
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139908098..139910179-chr6:139916224..139919110,3	K562	blood:
2	chr6:139918023..139920121-chr6:139924090..139925630,2	K562	blood:
3	chr6:139768879..139771871-chr6:139917556..139920182,2	K562	blood:
4	chr6:139693711..139697015-chr6:139916879..139919685,3	K562	blood:
5	chr6:139695495..139698126-chr6:139917081..139919685,3	K562	blood:
6	chr6:139908098..139910179-chr6:139917133..139919110,3	K562	blood:
7	chr6:139916889..139920627-chr6:139922127..139924078,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759027	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12524508	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12525208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12525587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12529380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660850	0.83[CHB][hapmap]
rs59846034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61654804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73775566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139900800-139919200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:139907200-139919800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
4	chr6:139908800-139920600	Enhancers	Fetal Intestine Small	intestine
5	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:139909600-139923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:139913000-139928600	Weak transcription	Ovary	ovary
8	chr6:139913600-139919200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
10	chr6:139915000-139921000	Enhancers	Colon Smooth Muscle	Colon
11	chr6:139915600-139919200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr6:139915600-139919800	Enhancers	Stomach Mucosa	stomach
13	chr6:139915600-139920200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:139915600-139920800	Enhancers	Fetal Intestine Large	intestine
15	chr6:139916000-139921000	Enhancers	NHLF	lung
16	chr6:139916200-139919200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:139916400-139922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:139916800-139924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:139917000-139922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:139917200-139919200	Enhancers	Fetal Heart	heart
21	chr6:139917400-139919400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr6:139917400-139919600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:139917600-139920200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:139917600-139920200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:139917600-139920200	Enhancers	NH-A	brain
26	chr6:139917600-139920800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:139917800-139919200	Enhancers	Stomach Smooth Muscle	stomach
28	chr6:139917800-139919400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:139917800-139919400	Enhancers	Fetal Kidney	kidney
30	chr6:139917800-139919400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:139917800-139919800	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:139917800-139919800	Enhancers	HMEC	breast
33	chr6:139917800-139920200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:139918000-139919600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:139918000-139919600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:139918200-139919800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:139918200-139919800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:139918200-139919800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:139918200-139921000	Enhancers	Fetal Stomach	stomach
40	chr6:139918400-139919200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr6:139918400-139919200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:139918400-139919200	Enhancers	Small Intestine	intestine
43	chr6:139918400-139919200	Flanking Active TSS	NHDF-Ad	bronchial
44	chr6:139918400-139919200	Flanking Active TSS	Osteobl	bone
45	chr6:139918400-139919400	Flanking Active TSS	Rectal Smooth Muscle	rectum
46	chr6:139918400-139919600	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:139918400-139919600	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr6:139918400-139919600	Enhancers	Placenta	Placenta
49	chr6:139918400-139919600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr6:139918400-139919600	Enhancers	HSMMtube	muscle

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