Variant report

Variant	rs73775563
Chromosome Location	chr6:139917902-139917903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139908098..139910179-chr6:139916224..139919110,3	K562	blood:
2	chr6:139768879..139771871-chr6:139917556..139920182,2	K562	blood:
3	chr6:139693711..139697015-chr6:139916879..139919685,3	K562	blood:
4	chr6:139695495..139698126-chr6:139917081..139919685,3	K562	blood:
5	chr6:139908098..139910179-chr6:139917133..139919110,3	K562	blood:
6	chr6:139916889..139920627-chr6:139922127..139924078,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11759027	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12524508	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12525208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12525587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12529380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59846034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61654804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73775566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139900800-139919200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:139907200-139919800	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:139907600-139918400	Weak transcription	Fetal Brain Male	brain
4	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
5	chr6:139908800-139920600	Enhancers	Fetal Intestine Small	intestine
6	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:139909600-139918800	Weak transcription	Left Ventricle	heart
8	chr6:139909600-139923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:139910000-139918000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:139910000-139918800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:139910200-139918400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:139910600-139918400	Weak transcription	A549	lung
13	chr6:139910800-139918400	Weak transcription	Fetal Lung	lung
14	chr6:139911200-139918000	Weak transcription	Brain Anterior Caudate	brain
15	chr6:139913000-139918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:139913000-139918400	Weak transcription	Liver	Liver
17	chr6:139913000-139918800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:139913000-139928600	Weak transcription	Ovary	ovary
19	chr6:139913200-139918400	Weak transcription	HSMMtube	muscle
20	chr6:139913400-139918000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:139913600-139918400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:139913600-139919200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:139913800-139918200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:139913800-139918400	Weak transcription	Brain Angular Gyrus	brain
25	chr6:139913800-139918400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:139913800-139918600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr6:139913800-139918600	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:139914000-139918400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:139914000-139918400	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr6:139914200-139918600	Weak transcription	K562	blood
31	chr6:139914200-139918800	Weak transcription	Psoas Muscle	Psoas
32	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
33	chr6:139915000-139921000	Enhancers	Colon Smooth Muscle	Colon
34	chr6:139915600-139919200	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:139915600-139919800	Enhancers	Stomach Mucosa	stomach
36	chr6:139915600-139920200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:139915600-139920800	Enhancers	Fetal Intestine Large	intestine
38	chr6:139915800-139918800	Weak transcription	Esophagus	oesophagus
39	chr6:139916000-139918000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:139916000-139918400	Enhancers	Rectal Smooth Muscle	rectum
41	chr6:139916000-139918400	Weak transcription	Small Intestine	intestine
42	chr6:139916000-139921000	Enhancers	NHLF	lung
43	chr6:139916200-139918400	Enhancers	NHDF-Ad	bronchial
44	chr6:139916200-139918600	Enhancers	HSMM	muscle
45	chr6:139916200-139919000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:139916200-139919200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr6:139916400-139918400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:139916400-139918400	Weak transcription	NHEK	skin
49	chr6:139916400-139918800	Weak transcription	Adipose Nuclei	Adipose
50	chr6:139916400-139922200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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