Variant report

Variant	rs12527215
Chromosome Location	chr6:139949047-139949048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139926929..139929579-chr6:139947168..139949800,3	K562	blood:
2	chr6:139943933..139945447-chr6:139947970..139950374,2	K562	blood:
3	chr6:139693949..139699229-chr6:139943197..139952021,15	K562	blood:
4	chr6:139907868..139910636-chr6:139948346..139950350,2	K562	blood:
5	chr6:139943947..139946309-chr6:139947970..139950022,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12524508	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12660850	0.82[CHB][hapmap]
rs59846034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61654804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73775563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73775564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73775566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139944800-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:139946200-139949200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:139946200-139949600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:139946600-139955400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:139946800-139949600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:139946800-139950000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:139947000-139949200	Enhancers	K562	blood
8	chr6:139947400-139949200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:139947400-139949400	Enhancers	Fetal Stomach	stomach
10	chr6:139947400-139949600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:139948000-139949400	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:139948000-139949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:139948000-139949600	Enhancers	Adipose Nuclei	Adipose
14	chr6:139948000-139949800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:139948000-139949800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:139948200-139949800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:139948600-139949400	Weak transcription	Right Atrium	heart
18	chr6:139948600-139950000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:139948800-139949200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:139948800-139949200	Weak transcription	Psoas Muscle	Psoas
21	chr6:139948800-139949400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:139949000-139949200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr6:139949000-139949600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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