Variant report

Variant	rs12524508
Chromosome Location	chr6:139955636-139955637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155078	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155083	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11755906	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759027	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12524701	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12525208	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12525587	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12527215	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12528197	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529380	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59846034	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61654804	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73775563	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73775564	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775566	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139949800-139959400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:139955200-139958400	Weak transcription	K562	blood
3	chr6:139955400-139958000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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