Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11162676	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12064196	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12093328	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12401629	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331717	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs170611	0.91[ASN][1000 genomes]
rs17102981	0.92[ASN][1000 genomes]
rs183458	0.81[ASN][1000 genomes]
rs228466	0.91[ASN][1000 genomes]
rs228467	0.91[ASN][1000 genomes]
rs228468	0.91[ASN][1000 genomes]
rs228474	0.91[ASN][1000 genomes]
rs228475	0.91[ASN][1000 genomes]
rs228477	0.91[ASN][1000 genomes]
rs228478	0.91[ASN][1000 genomes]
rs228479	0.91[ASN][1000 genomes]
rs228480	0.91[ASN][1000 genomes]
rs228482	0.91[ASN][1000 genomes]
rs228483	0.91[ASN][1000 genomes]
rs228484	0.91[ASN][1000 genomes]
rs228485	0.91[ASN][1000 genomes]
rs228486	0.91[ASN][1000 genomes]
rs228487	0.91[ASN][1000 genomes]
rs228489	0.91[ASN][1000 genomes]
rs228496	0.81[ASN][1000 genomes]
rs35764284	0.81[ASN][1000 genomes]
rs393486	0.81[ASN][1000 genomes]
rs417181	0.91[ASN][1000 genomes]
rs427551	0.91[ASN][1000 genomes]
rs428585	0.91[ASN][1000 genomes]
rs4650312	0.91[ASN][1000 genomes]
rs4650316	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61766097	0.92[ASN][1000 genomes]
rs6424645	0.92[ASN][1000 genomes]
rs6681555	0.93[ASN][1000 genomes]
rs7520891	0.93[ASN][1000 genomes]
rs7551723	0.93[ASN][1000 genomes]
rs7553133	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv870962	chr1:79755185-79835066	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79762800-79769800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:79767200-79770800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:79768600-79769000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:79768600-79769000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:79768600-79769000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:79768600-79769200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:79768600-79769200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:79768600-79769200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:79768600-79770000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:79768800-79769200	Enhancers	Brain Germinal Matrix	brain

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