Variant report

Variant	rs6681555
Chromosome Location	chr1:79730909-79730910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11162676	0.93[ASN][1000 genomes]
rs11162677	0.93[ASN][1000 genomes]
rs12064196	0.93[ASN][1000 genomes]
rs12093328	0.93[ASN][1000 genomes]
rs12401629	0.93[ASN][1000 genomes]
rs1331717	0.93[ASN][1000 genomes]
rs170611	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17102981	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs172926	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs183458	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228466	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228467	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228468	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228472	0.86[AMR][1000 genomes]
rs228474	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228475	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228477	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228478	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228479	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228480	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228482	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228483	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228484	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228485	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228486	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228487	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228489	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs228496	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs228499	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228500	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs228502	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228506	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228508	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228510	0.80[EUR][1000 genomes]
rs228511	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228512	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228514	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228515	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs228517	0.80[EUR][1000 genomes]
rs228518	0.80[EUR][1000 genomes]
rs228519	0.80[EUR][1000 genomes]
rs228522	0.80[EUR][1000 genomes]
rs35764284	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs368460	0.83[AMR][1000 genomes]
rs393486	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs417181	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs418641	0.86[AMR][1000 genomes]
rs427551	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs428585	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4650312	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4650316	0.93[ASN][1000 genomes]
rs4650402	0.86[AMR][1000 genomes]
rs4650403	0.86[AMR][1000 genomes]
rs61766097	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6424644	0.86[AMR][1000 genomes]
rs6424645	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6674681	0.86[AMR][1000 genomes]
rs7520891	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551723	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553133	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79729200-79731400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr1:79729200-79731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:79729400-79731000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:79729400-79731000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr1:79729400-79731600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:79730000-79731600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:79730200-79734600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:79730600-79731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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