Variant report
| Variant | rs12401629 |
|---|---|
| Chromosome Location | chr1:79767966-79767967 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs11162676 | 0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11162677 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12064196 | 0.96[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12093328 | 0.97[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1331717 | 0.96[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs170611 | 0.91[ASN][1000 genomes] |
| rs17102981 | 0.92[ASN][1000 genomes] |
| rs183458 | 0.81[ASN][1000 genomes] |
| rs228466 | 0.91[ASN][1000 genomes] |
| rs228467 | 0.91[ASN][1000 genomes] |
| rs228468 | 0.91[ASN][1000 genomes] |
| rs228474 | 0.91[ASN][1000 genomes] |
| rs228475 | 0.91[ASN][1000 genomes] |
| rs228477 | 0.91[ASN][1000 genomes] |
| rs228478 | 0.91[ASN][1000 genomes] |
| rs228479 | 0.91[ASN][1000 genomes] |
| rs228480 | 0.91[ASN][1000 genomes] |
| rs228482 | 0.91[ASN][1000 genomes] |
| rs228483 | 0.91[ASN][1000 genomes] |
| rs228484 | 0.91[ASN][1000 genomes] |
| rs228485 | 0.91[ASN][1000 genomes] |
| rs228486 | 0.91[ASN][1000 genomes] |
| rs228487 | 0.91[ASN][1000 genomes] |
| rs228489 | 0.91[ASN][1000 genomes] |
| rs228496 | 0.81[ASN][1000 genomes] |
| rs35764284 | 0.81[ASN][1000 genomes] |
| rs393486 | 0.81[ASN][1000 genomes] |
| rs417181 | 0.91[ASN][1000 genomes] |
| rs427551 | 0.91[ASN][1000 genomes] |
| rs428585 | 0.91[ASN][1000 genomes] |
| rs4650312 | 0.91[ASN][1000 genomes] |
| rs4650316 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61766097 | 0.92[ASN][1000 genomes] |
| rs6424645 | 0.92[ASN][1000 genomes] |
| rs6681555 | 0.93[ASN][1000 genomes] |
| rs7520891 | 0.93[ASN][1000 genomes] |
| rs7551723 | 0.93[ASN][1000 genomes] |
| rs7553133 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv871182 | chr1:79614989-79822735 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv999471 | chr1:79650363-79774433 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv870657 | chr1:79701220-79890774 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | nsv870962 | chr1:79755185-79835066 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:79762800-79769800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr1:79767200-79770800 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
