Variant report

Variant	rs11162689
Chromosome Location	chr1:79788169-79788170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11162665	1.00[AMR][1000 genomes]
rs11162690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12066657	1.00[AMR][1000 genomes]
rs12073676	1.00[AMR][1000 genomes]
rs12073877	1.00[AMR][1000 genomes]
rs12081771	1.00[AMR][1000 genomes]
rs12084133	1.00[AMR][1000 genomes]
rs12090579	1.00[AMR][1000 genomes]
rs12094970	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098591	1.00[AMR][1000 genomes]
rs17102959	1.00[AMR][1000 genomes]
rs17102960	1.00[AMR][1000 genomes]
rs17102961	1.00[AMR][1000 genomes]
rs17102971	1.00[AMR][1000 genomes]
rs17103021	1.00[AMR][1000 genomes]
rs17103058	0.97[AFR][1000 genomes]
rs17103060	0.81[AFR][1000 genomes]
rs57440705	1.00[AMR][1000 genomes]
rs58229074	1.00[AMR][1000 genomes]
rs59133072	1.00[AMR][1000 genomes]
rs72941388	1.00[AMR][1000 genomes]
rs72943039	1.00[AMR][1000 genomes]
rs72943069	1.00[AMR][1000 genomes]
rs72945022	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945043	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945048	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945064	1.00[AMR][1000 genomes]
rs72945074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9943263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv870962	chr1:79755185-79835066	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3364783	chr1:79786074-79815088	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3384616	chr1:79788134-79814492	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79788000-79788400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:79788000-79788600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:79788000-79789800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:79788000-79789800	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links