Variant report

Variant	rs58229074
Chromosome Location	chr1:79696820-79696821
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10489652	0.90[AFR][1000 genomes]
rs11162665	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11162689	1.00[AMR][1000 genomes]
rs11162690	1.00[AMR][1000 genomes]
rs12066657	1.00[AMR][1000 genomes]
rs12073676	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073877	1.00[AMR][1000 genomes]
rs12077798	0.90[AFR][1000 genomes]
rs12080703	0.93[AFR][1000 genomes]
rs12080744	0.93[AFR][1000 genomes]
rs12081771	1.00[AMR][1000 genomes]
rs12084133	1.00[AMR][1000 genomes]
rs12089786	0.90[AFR][1000 genomes]
rs12090579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091759	0.90[AFR][1000 genomes]
rs12092829	0.90[AFR][1000 genomes]
rs12094970	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102918	0.88[AFR][1000 genomes]
rs17102934	0.90[AFR][1000 genomes]
rs17102959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17102971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17103021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57440705	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57890283	0.94[AFR][1000 genomes]
rs58899147	0.94[AFR][1000 genomes]
rs59133072	1.00[AMR][1000 genomes]
rs72941324	0.90[AFR][1000 genomes]
rs72941388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945022	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945048	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945064	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945074	1.00[AMR][1000 genomes]
rs9943263	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79695800-79697400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:79696000-79698200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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