Variant report
| Variant | rs12084133 |
|---|---|
| Chromosome Location | chr1:79733959-79733960 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:79728080..79730865-chr1:79731789..79734341,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11162665 | 1.00[AMR][1000 genomes] |
| rs11162689 | 1.00[AMR][1000 genomes] |
| rs11162690 | 1.00[AMR][1000 genomes] |
| rs12066657 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12073676 | 1.00[AMR][1000 genomes] |
| rs12073877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12081771 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12090579 | 1.00[AMR][1000 genomes] |
| rs12094970 | 1.00[AMR][1000 genomes] |
| rs17098591 | 1.00[AMR][1000 genomes] |
| rs17102959 | 1.00[AMR][1000 genomes] |
| rs17102960 | 1.00[AMR][1000 genomes] |
| rs17102961 | 1.00[AMR][1000 genomes] |
| rs17102971 | 1.00[AMR][1000 genomes] |
| rs17103021 | 1.00[AMR][1000 genomes] |
| rs57440705 | 1.00[AMR][1000 genomes] |
| rs58229074 | 1.00[AMR][1000 genomes] |
| rs59133072 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72941388 | 1.00[AMR][1000 genomes] |
| rs72943039 | 1.00[AMR][1000 genomes] |
| rs72943069 | 1.00[AMR][1000 genomes] |
| rs72945022 | 1.00[AMR][1000 genomes] |
| rs72945043 | 1.00[AMR][1000 genomes] |
| rs72945048 | 1.00[AMR][1000 genomes] |
| rs72945064 | 1.00[AMR][1000 genomes] |
| rs72945074 | 1.00[AMR][1000 genomes] |
| rs9943263 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv830326 | chr1:79573379-79735667 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv871182 | chr1:79614989-79822735 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv999471 | chr1:79650363-79774433 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv870657 | chr1:79701220-79890774 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:79730200-79734600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr1:79731400-79734200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
