The 2.0 version of rSNPBase

Variant report

Variant rs11163979
Chromosome Location chr1:84949151-84949152
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84946000-84956400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:84946000-84956400 Weak transcription Gastric stomach
3 chr1:84946000-84956400 Weak transcription Spleen Spleen
4 chr1:84946000-84965800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr1:84946000-84967000 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr1:84946000-84969600 Weak transcription Esophagus oesophagus
7 chr1:84946000-84970400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:84946000-84970800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:84946200-84949200 Weak transcription H1 Cell Line embryonic stem cell
10 chr1:84946200-84955200 Weak transcription Right Ventricle heart
11 chr1:84946200-84956200 Weak transcription Colonic Mucosa Colon
12 chr1:84946200-84962800 Weak transcription HSMMtube muscle
13 chr1:84946400-84949400 Weak transcription NH-A brain
14 chr1:84946400-84955200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:84946400-84955600 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:84946400-84956200 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr1:84946400-84956400 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:84946400-84962000 Weak transcription Fetal Brain Male brain
19 chr1:84946400-84962800 Weak transcription Stomach Mucosa stomach
20 chr1:84946600-84950800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:84946600-84955600 Weak transcription Brain Germinal Matrix brain
22 chr1:84946600-84956400 Weak transcription Psoas Muscle Psoas
23 chr1:84946800-84955400 Weak transcription Brain Cingulate Gyrus brain
24 chr1:84946800-84967400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
25 chr1:84947000-84950400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr1:84947000-84950400 Strong transcription Placenta Placenta
27 chr1:84947000-84953200 Strong transcription iPS-20b Cell Line embryonic stem cell
28 chr1:84947000-84965800 Strong transcription HUES64 Cell Line embryonic stem cell
29 chr1:84947200-84949200 Weak transcription Adipose Nuclei Adipose
30 chr1:84947200-84949200 Weak transcription Fetal Intestine Large intestine
31 chr1:84947200-84949200 Weak transcription Thymus Thymus
32 chr1:84947200-84949400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr1:84947200-84949600 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:84947200-84950000 Strong transcription Rectal Mucosa Donor 31 rectum
35 chr1:84947200-84950200 Weak transcription Fetal Brain Female brain
36 chr1:84947200-84950400 Strong transcription HSMM muscle
37 chr1:84947200-84950600 Weak transcription Fetal Muscle Leg muscle
38 chr1:84947200-84951000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:84947200-84951200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:84947200-84951600 Strong transcription HUES48 Cell Line embryonic stem cell
41 chr1:84947200-84951800 Strong transcription Primary T cells fromperipheralblood blood
42 chr1:84947200-84952000 Strong transcription Fetal Thymus thymus
43 chr1:84947200-84953800 Strong transcription Primary B cells from cord blood blood
44 chr1:84947200-84955400 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr1:84947200-84955600 Weak transcription Pancreas Pancrea
46 chr1:84947200-84955600 Weak transcription Stomach Smooth Muscle stomach
47 chr1:84947200-84956400 Weak transcription Brain Angular Gyrus brain
48 chr1:84947200-84956400 Weak transcription NHLF lung
49 chr1:84947200-84958400 Weak transcription Brain Hippocampus Middle brain
50 chr1:84947400-84949200 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015