Variant report

Variant	rs9645393
Chromosome Location	chr1:84943866-84943867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:84943777..84946552-chr1:84970497..84973179,2	MCF-7	breast:
2	chr1:84943714..84946459-chr1:85038706..85040687,2	K562	blood:
3	chr1:84943703..84948095-chr1:85037647..85043843,8	K562	blood:
4	chr1:84941357..84944267-chr1:84948285..84950079,2	MCF-7	breast:
5	chr1:84920904..84923414-chr1:84941843..84944839,2	K562	blood:
6	chr1:84928129..84930451-chr1:84943094..84944929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117151	Chromatin interaction
ENSG00000122432	Chromatin interaction
ENSG00000174021	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11163969	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11163970	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11163979	0.94[ASN][1000 genomes]
rs11163980	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163981	0.94[ASN][1000 genomes]
rs11163990	0.91[ASN][1000 genomes]
rs11163994	0.94[ASN][1000 genomes]
rs11163999	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1144276	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12036957	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12040469	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12071149	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12128801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12403545	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1246159	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1246236	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1246253	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1246254	0.89[ASN][1000 genomes]
rs1246255	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1400777	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1533374	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2292191	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389743	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2659173	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2677839	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794217	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2794218	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2911593	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2994954	0.85[ASN][1000 genomes]
rs2994955	0.84[ASN][1000 genomes]
rs3021402	0.83[ASN][1000 genomes]
rs312397	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs312401	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4906995	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906997	0.83[ASN][1000 genomes]
rs4907078	0.89[ASN][1000 genomes]
rs6576713	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6692765	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6704211	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516200	0.86[ASN][1000 genomes]
rs7537818	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84943800-84944800	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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