Variant report

Variant	rs4906995
Chromosome Location	chr1:84933395-84933396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84932734..84935177-chr1:84944931..84946479,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117133	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10874451	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11163969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163970	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11163971	0.81[CHB][hapmap]
rs11163972	0.81[CHB][hapmap]
rs11163979	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11163981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163990	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11163994	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163999	0.83[ASN][1000 genomes]
rs1123981	0.81[CHB][hapmap]
rs1144276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11586006	0.81[CHB][hapmap]
rs12036957	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12040469	0.94[ASN][1000 genomes]
rs12071149	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12124731	0.81[CHB][hapmap]
rs12125418	0.89[CEU][hapmap]
rs12126584	0.81[CHB][hapmap]
rs12126924	0.81[CHB][hapmap]
rs12128801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12136756	0.81[CHB][hapmap]
rs12403545	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1246159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1246236	0.94[ASN][1000 genomes]
rs1246253	0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1246254	0.95[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1246255	0.87[ASN][1000 genomes]
rs1400777	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs1506707	0.81[CHB][hapmap]
rs1533374	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17110519	0.81[CHB][hapmap]
rs1911159	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2271620	0.81[CHB][hapmap]
rs2292191	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2303306	0.91[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs2389743	0.87[ASN][1000 genomes]
rs2659173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2677839	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2794217	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2794218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2911589	0.90[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs2911590	0.81[CHB][hapmap]
rs2911593	0.85[ASN][1000 genomes]
rs2945155	0.81[CHB][hapmap]
rs2994953	0.81[CHB][hapmap]
rs2994954	0.90[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2994955	0.84[ASN][1000 genomes]
rs3021402	0.90[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs312395	0.81[CHB][hapmap]
rs312397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs312401	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3813605	0.81[CHB][hapmap]
rs4906997	0.83[ASN][1000 genomes]
rs4907078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4907079	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs6576713	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs6690204	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6692765	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6704211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7512922	0.81[CHB][hapmap]
rs7514763	0.81[CHB][hapmap]
rs7516200	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7519606	0.81[CHB][hapmap]
rs7537818	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9645393	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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