Variant report

Variant	rs1911159
Chromosome Location	chr1:84948417-84948418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11163969	0.89[ASN][1000 genomes]
rs11163970	0.89[ASN][1000 genomes]
rs11163971	0.81[CHB][hapmap]
rs11163972	0.81[CHB][hapmap]
rs11163979	0.91[ASN][1000 genomes]
rs11163980	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11163981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11163990	0.90[ASN][1000 genomes]
rs11163994	0.91[ASN][1000 genomes]
rs1123981	0.81[CHB][hapmap]
rs1144276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11586006	0.81[CHB][hapmap]
rs12036957	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12040469	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12071149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12124731	0.81[CHB][hapmap]
rs12126584	0.81[CHB][hapmap]
rs12126924	0.81[CHB][hapmap]
rs12128801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12136756	0.81[CHB][hapmap]
rs12403545	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs1246159	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1246236	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1246253	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1246254	0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1246255	0.87[ASN][1000 genomes]
rs1400777	0.96[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1506707	0.81[CHB][hapmap]
rs1533374	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17110519	0.81[CHB][hapmap]
rs2271620	0.81[CHB][hapmap]
rs2292191	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2303306	0.81[CHB][hapmap];0.95[YRI][hapmap]
rs2389743	0.83[ASN][1000 genomes]
rs2659173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2677839	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2794217	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2794218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2911589	0.81[CHB][hapmap];0.95[YRI][hapmap]
rs2911590	0.81[CHB][hapmap]
rs2911593	0.81[ASN][1000 genomes]
rs2945155	0.81[CHB][hapmap]
rs2994953	0.81[CHB][hapmap]
rs2994954	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2994955	0.82[ASN][1000 genomes]
rs3021402	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs312395	0.81[CHB][hapmap]
rs312397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs312401	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3813605	0.81[CHB][hapmap]
rs4906995	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4906997	0.81[ASN][1000 genomes]
rs4907078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6576713	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs6692765	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs6704211	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7512922	0.81[CHB][hapmap]
rs7514763	0.81[CHB][hapmap]
rs7516200	0.82[ASN][1000 genomes]
rs7519606	0.81[CHB][hapmap]
rs7537818	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9645393	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84945600-84949000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:84946000-84948600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:84946000-84949000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:84946000-84949000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:84946000-84956400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:84946000-84956400	Weak transcription	Gastric	stomach
7	chr1:84946000-84956400	Weak transcription	Spleen	Spleen
8	chr1:84946000-84965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:84946000-84967000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr1:84946000-84969600	Weak transcription	Esophagus	oesophagus
11	chr1:84946000-84970400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:84946000-84970800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:84946200-84948600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:84946200-84948600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:84946200-84949000	Weak transcription	Fetal Stomach	stomach
16	chr1:84946200-84949200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:84946200-84955200	Weak transcription	Right Ventricle	heart
18	chr1:84946200-84956200	Weak transcription	Colonic Mucosa	Colon
19	chr1:84946200-84962800	Weak transcription	HSMMtube	muscle
20	chr1:84946400-84948600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:84946400-84948600	Weak transcription	Osteobl	bone
22	chr1:84946400-84948800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr1:84946400-84949000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:84946400-84949400	Weak transcription	NH-A	brain
25	chr1:84946400-84955200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:84946400-84955600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr1:84946400-84956200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:84946400-84956400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:84946400-84962000	Weak transcription	Fetal Brain Male	brain
30	chr1:84946400-84962800	Weak transcription	Stomach Mucosa	stomach
31	chr1:84946600-84948600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr1:84946600-84950800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:84946600-84955600	Weak transcription	Brain Germinal Matrix	brain
34	chr1:84946600-84956400	Weak transcription	Psoas Muscle	Psoas
35	chr1:84946800-84948600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
36	chr1:84946800-84955400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:84946800-84967400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:84947000-84948800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr1:84947000-84950400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:84947000-84950400	Strong transcription	Placenta	Placenta
41	chr1:84947000-84953200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:84947000-84965800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:84947200-84948600	Weak transcription	Liver	Liver
44	chr1:84947200-84948600	Active TSS	GM12878-XiMat	blood
45	chr1:84947200-84949000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr1:84947200-84949000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr1:84947200-84949200	Weak transcription	Adipose Nuclei	Adipose
48	chr1:84947200-84949200	Weak transcription	Fetal Intestine Large	intestine
49	chr1:84947200-84949200	Weak transcription	Thymus	Thymus
50	chr1:84947200-84949400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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