Variant report

Variant	rs11164857
Chromosome Location	chr1:93468092-93468093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10493864	0.85[EUR][1000 genomes]
rs10874753	1.00[JPT][hapmap]
rs11164820	1.00[CHB][hapmap]
rs11586570	1.00[CHB][hapmap]
rs12728322	1.00[CHB][hapmap]
rs17131682	0.91[CEU][hapmap]
rs17381426	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs1854797	1.00[CHB][hapmap]
rs2893226	1.00[CHB][hapmap]
rs34244251	1.00[CHB][hapmap]
rs35183060	1.00[CHB][hapmap]
rs35605531	0.84[EUR][1000 genomes]
rs494745	1.00[CHB][hapmap]
rs6604026	1.00[CHB][hapmap]
rs7514280	1.00[CHB][hapmap]
rs7521417	1.00[CHB][hapmap]
rs7533572	0.87[EUR][1000 genomes]
rs7533577	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11164857	FAM69A	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93467000-93470200	Weak transcription	GM12878-XiMat	blood
2	chr1:93467000-93474600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:93467600-93468600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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