Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10493864	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10493865	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164820	1.00[CHB][hapmap]
rs11164857	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs11586570	1.00[CHB][hapmap]
rs12728322	1.00[CHB][hapmap]
rs17131682	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131685	0.85[AMR][1000 genomes]
rs1854797	1.00[CHB][hapmap]
rs2492901	0.80[AFR][1000 genomes]
rs2893226	1.00[CHB][hapmap]
rs34073220	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34244251	1.00[CHB][hapmap]
rs35183060	1.00[CHB][hapmap]
rs35605531	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs494745	1.00[CHB][hapmap]
rs6604026	1.00[CHB][hapmap]
rs71652517	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7514280	1.00[CHB][hapmap]
rs7521417	1.00[CHB][hapmap]
rs7533572	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7533577	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17381426	FAM69A	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93467000-93474600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:93471600-93478000	Weak transcription	GM12878-XiMat	blood

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