Variant report

Variant	rs11165134
Chromosome Location	chr1:94860629-94860630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94859969..94862064-chr1:94864707..94866674,2	MCF-7	breast:
2	chr1:94851431..94853630-chr1:94859624..94862192,2	K562	blood:
3	chr1:94851431..94853630-chr1:94859546..94862192,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11165120	0.80[ASW][hapmap];0.86[GIH][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11165121	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11165128	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11585551	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11587699	0.81[JPT][hapmap]
rs11589715	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12057415	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1330855	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs17111482	1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1765622	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1765623	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2391467	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3789688	0.86[ASW][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap]
rs3814019	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3827751	0.81[JPT][hapmap]
rs722296	0.82[CHD][hapmap];0.81[JPT][hapmap]
rs7535547	0.80[ASW][hapmap];0.86[GIH][hapmap];0.90[LWK][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7543663	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7554220	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs902337	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11165134	DPYD	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94859400-94861800	Enhancers	Fetal Thymus	thymus
2	chr1:94859800-94861600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:94859800-94862000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:94859800-94862200	Enhancers	HepG2	liver
5	chr1:94860000-94861200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:94860000-94861200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:94860000-94861200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:94860000-94861600	Enhancers	Thymus	Thymus
9	chr1:94860000-94861800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:94860000-94862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr1:94860200-94861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:94860200-94861000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:94860200-94861400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr1:94860200-94861600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:94860200-94861800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:94860200-94861800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr1:94860200-94862000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr1:94860400-94861400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:94860400-94861400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:94860400-94861800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:94860600-94861200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr1:94860600-94861400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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