Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165120	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165121	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165128	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165134	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11585551	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11589715	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12057415	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17111482	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1765622	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1765623	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2391467	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7535547	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7543663	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7554220	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94846200-94854400	Enhancers	Fetal Intestine Small	intestine
2	chr1:94846600-94851400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:94847400-94851800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:94849400-94851600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr1:94849600-94851400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:94849600-94851800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:94849600-94852200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr1:94850000-94851400	Flanking Active TSS	HepG2	liver
9	chr1:94850000-94854000	Enhancers	Fetal Intestine Large	intestine
10	chr1:94850200-94851400	Active TSS	Rectal Smooth Muscle	rectum
11	chr1:94850200-94851400	Flanking Active TSS	A549	lung
12	chr1:94850400-94851400	Active TSS	Colonic Mucosa	Colon
13	chr1:94850600-94851400	Flanking Active TSS	Fetal Thymus	thymus
14	chr1:94850800-94851400	Enhancers	Liver	Liver
15	chr1:94850800-94851800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:94851200-94851400	Enhancers	Duodenum Mucosa	Duodenum
17	chr1:94851200-94851600	Enhancers	Primary T cells from cord blood	blood
18	chr1:94851200-94851600	Active TSS	Thymus	Thymus
19	chr1:94851200-94851800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr1:94851200-94852000	Enhancers	Stomach Mucosa	stomach
21	chr1:94851200-94852200	Enhancers	Dnd41	blood

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