Variant report

Variant	rs7543663
Chromosome Location	chr1:94784448-94784449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP29-1	chr1:94784035-94784463	XLOC_000920

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165120	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165121	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165128	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165134	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11585551	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11589715	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12057415	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17111482	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1765622	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1765623	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391467	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7535547	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7554220	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs902337	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94774600-94787800	Weak transcription	Aorta	Aorta
2	chr1:94776600-94785200	Weak transcription	Left Ventricle	heart
3	chr1:94776600-94790400	Weak transcription	Psoas Muscle	Psoas
4	chr1:94776800-94784600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:94777000-94785000	Weak transcription	Right Atrium	heart
6	chr1:94777000-94785200	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:94778600-94790400	Weak transcription	Spleen	Spleen
8	chr1:94781400-94785800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:94781600-94784800	Enhancers	HUVEC	blood vessel
10	chr1:94781800-94784800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:94781800-94785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr1:94782000-94784600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr1:94782000-94785000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:94782000-94785200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr1:94782200-94784800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:94782200-94784800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:94782800-94789000	Weak transcription	Fetal Kidney	kidney
18	chr1:94783000-94789400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr1:94783200-94784600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:94783200-94784800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:94783200-94784800	Weak transcription	Osteobl	bone
22	chr1:94783200-94785000	Weak transcription	NHDF-Ad	bronchial
23	chr1:94783200-94786000	Enhancers	HepG2	liver
24	chr1:94783200-94787200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:94783200-94787200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr1:94783200-94787200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:94783200-94787400	Weak transcription	HSMM	muscle
28	chr1:94783200-94787800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:94783200-94788400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:94783200-94792800	Weak transcription	Fetal Intestine Small	intestine
31	chr1:94783400-94784800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:94783400-94785000	Weak transcription	NH-A	brain
33	chr1:94783400-94787400	Enhancers	A549	lung
34	chr1:94783600-94784800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:94783600-94784800	Weak transcription	HMEC	breast
36	chr1:94783600-94787000	Weak transcription	NHEK	skin
37	chr1:94783600-94787800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:94784000-94784600	Enhancers	Pancreas	Pancrea
39	chr1:94784000-94785000	Weak transcription	Fetal Heart	heart
40	chr1:94784000-94785600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:94784200-94785200	Weak transcription	Placenta	Placenta
42	chr1:94784200-94785600	Enhancers	Stomach Mucosa	stomach
43	chr1:94784200-94786000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr1:94784200-94787800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:94784400-94785200	Weak transcription	Adipose Nuclei	Adipose
46	chr1:94784400-94785200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr1:94784400-94785600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:94784400-94787800	Weak transcription	Lung	lung
49	chr1:94784400-94791000	Weak transcription	Gastric	stomach

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