Variant report

Variant	rs11585551
Chromosome Location	chr1:94848142-94848143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165120	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11165121	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11165128	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165134	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11589715	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12057415	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17111482	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1765622	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1765623	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391467	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7535547	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7543663	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7554220	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs902337	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94834600-94849400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:94843600-94849200	Enhancers	HepG2	liver
3	chr1:94843800-94849200	Enhancers	Liver	Liver
4	chr1:94846000-94850600	Enhancers	Fetal Thymus	thymus
5	chr1:94846200-94854400	Enhancers	Fetal Intestine Small	intestine
6	chr1:94846600-94850200	Enhancers	Thymus	Thymus
7	chr1:94846600-94851200	Enhancers	Primary hematopoietic stem cells	blood
8	chr1:94846600-94851400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:94847000-94849000	Enhancers	Pancreas	Pancrea
10	chr1:94847200-94848400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:94847200-94848400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:94847200-94848600	Enhancers	Dnd41	blood
13	chr1:94847400-94848200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr1:94847400-94849200	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:94847400-94850200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:94847400-94850600	Enhancers	Stomach Mucosa	stomach
17	chr1:94847400-94851800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:94847800-94848200	Enhancers	Placenta	Placenta
19	chr1:94847800-94848200	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr1:94847800-94848800	Weak transcription	Fetal Lung	lung
21	chr1:94847800-94849200	Enhancers	A549	lung
22	chr1:94847800-94849600	Enhancers	Fetal Intestine Large	intestine
23	chr1:94848000-94848200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr1:94848000-94849000	Weak transcription	Primary T cells from cord blood	blood
25	chr1:94848000-94849000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:94848000-94849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr1:94848000-94850200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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