Variant report

Variant	rs11167996
Chromosome Location	chr5:147088798-147088799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10477342	0.85[EUR][1000 genomes]
rs12653862	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12659905	0.82[EUR][1000 genomes]
rs1549912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17497229	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17497858	0.85[EUR][1000 genomes]
rs17497914	0.83[EUR][1000 genomes]
rs17498180	0.82[EUR][1000 genomes]
rs17563332	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17563872	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2116770	0.85[EUR][1000 genomes]
rs4593256	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4705042	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6873548	0.82[GIH][hapmap]
rs6895952	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72835149	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11167996	SH3RF2	cis	parietal	SCAN
rs11167996	MRPL45	trans	parietal	SCAN
rs11167996	GRPEL2	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147079600-147091600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:147085000-147089200	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:147085000-147093200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:147085600-147092800	Weak transcription	Brain Angular Gyrus	brain
7	chr5:147086000-147091600	Weak transcription	Brain Substantia Nigra	brain
8	chr5:147088000-147088800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:147088000-147088800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:147088000-147088800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:147088400-147088800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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