Variant report

Variant	rs17497229
Chromosome Location	chr5:147086937-147086938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147084806..147087752-chr5:147100752..147102647,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10477342	0.84[EUR][1000 genomes]
rs11167996	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12653862	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659905	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13172946	1.00[AFR][1000 genomes]
rs1549912	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495305	1.00[AFR][1000 genomes]
rs17496036	1.00[AFR][1000 genomes]
rs17496399	1.00[AFR][1000 genomes]
rs17496550	1.00[AFR][1000 genomes]
rs17497858	0.84[EUR][1000 genomes]
rs17497914	0.82[EUR][1000 genomes]
rs17498180	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17561784	1.00[AFR][1000 genomes]
rs17562343	1.00[AFR][1000 genomes]
rs17563332	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17563872	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2053050	1.00[AFR][1000 genomes]
rs2053052	1.00[AFR][1000 genomes]
rs2116770	0.84[EUR][1000 genomes]
rs35130412	1.00[AFR][1000 genomes]
rs35285805	1.00[AFR][1000 genomes]
rs4593256	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4705042	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4705189	1.00[AFR][1000 genomes]
rs4705190	1.00[AFR][1000 genomes]
rs6873548	0.82[GIH][hapmap]
rs6895952	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71580441	1.00[AFR][1000 genomes]
rs72835149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17497229	SH3RF2	cis	parietal	SCAN
rs17497229	MRPL45	trans	parietal	SCAN
rs17497229	GRPEL2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147079600-147091600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:147079600-147101200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:147085000-147088000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:147085000-147089200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:147085000-147093200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:147085600-147092800	Weak transcription	Brain Angular Gyrus	brain
8	chr5:147086000-147091600	Weak transcription	Brain Substantia Nigra	brain

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