Variant report

Variant	rs17562343
Chromosome Location	chr5:147065458-147065459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12653862	1.00[AFR][1000 genomes]
rs12659905	1.00[AFR][1000 genomes]
rs13162740	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13172946	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17107181	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107192	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107200	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17495305	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17495840	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17496036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17497229	1.00[AFR][1000 genomes]
rs17498180	1.00[AFR][1000 genomes]
rs17561036	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17561784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17563332	1.00[AFR][1000 genomes]
rs17563872	1.00[AFR][1000 genomes]
rs2053050	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2053052	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35130412	1.00[AFR][1000 genomes]
rs35285805	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4705042	1.00[AFR][1000 genomes]
rs4705189	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4705190	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6895952	1.00[AFR][1000 genomes]
rs71580441	1.00[AFR][1000 genomes]
rs72835149	1.00[AFR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:147051400-147068200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:147051400-147070400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:147051400-147076600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:147051600-147066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:147051600-147075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:147051600-147077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:147051600-147078400	Weak transcription	Primary T cells from cord blood	blood
9	chr5:147051800-147076800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr5:147060400-147072600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:147061000-147065600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:147063800-147068200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:147064000-147066200	Enhancers	Brain Anterior Caudate	brain
14	chr5:147064000-147071400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:147064200-147068400	Weak transcription	Fetal Brain Female	brain
16	chr5:147064400-147069600	Enhancers	Brain Substantia Nigra	brain
17	chr5:147064800-147065800	Enhancers	Brain Germinal Matrix	brain
18	chr5:147065200-147067000	Enhancers	Brain Hippocampus Middle	brain
19	chr5:147065200-147071200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:147065400-147065800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:147065400-147066000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:147065400-147066200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:147065400-147066200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:147065400-147066200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:147065400-147067000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:147065400-147067200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr5:147065400-147069800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:147065400-147070000	Enhancers	Brain Angular Gyrus	brain
29	chr5:147065400-147070000	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links