Variant report

Variant	rs17495840
Chromosome Location	chr5:147054747-147054748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:146833283..146833959-chr5:147054419..147055103,2	MCF-7	breast:
2	chr5:147007748..147008285-chr5:147054476..147055302,2	MCF-7	breast:
3	chr5:147008529..147009229-chr5:147054049..147054978,2	MCF-7	breast:
4	chr5:147007334..147008258-chr5:147054474..147055017,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113657	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12656104	0.93[ASN][1000 genomes]
rs13162740	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13172946	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107181	0.97[EUR][1000 genomes]
rs17107192	0.97[EUR][1000 genomes]
rs17107200	0.95[EUR][1000 genomes]
rs17495305	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496036	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17496399	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17496550	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17561036	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17561784	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17562343	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2053050	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053052	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35285805	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705189	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147039600-147061800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:147042000-147076800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:147051400-147068200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:147051400-147070400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:147051400-147076600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:147051600-147057600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:147051600-147066600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:147051600-147075600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:147051600-147077000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:147051600-147078400	Weak transcription	Primary T cells from cord blood	blood
11	chr5:147051800-147076800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:147052000-147059200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:147052000-147059800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:147052400-147055000	Enhancers	Fetal Lung	lung
15	chr5:147052800-147055000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr5:147052800-147055000	Enhancers	Fetal Brain Male	brain
17	chr5:147052800-147055400	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:147053400-147064800	Weak transcription	Brain Germinal Matrix	brain
19	chr5:147054200-147064000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr5:147054400-147065400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:147054600-147061800	Weak transcription	Brain Anterior Caudate	brain
22	chr5:147054600-147065400	Weak transcription	Brain Angular Gyrus	brain

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