The 2.0 version of rSNPBase

Variant report

Variant rs4705189
Chromosome Location chr5:147039309-147039310
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:147009800-147051200 Weak transcription Fetal Muscle Trunk muscle
2 chr5:147015400-147050000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr5:147016400-147052400 Weak transcription Primary B cells from cord blood blood
4 chr5:147016600-147047400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr5:147021400-147042800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr5:147025200-147041200 Weak transcription Brain Hippocampus Middle brain
7 chr5:147025200-147053000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr5:147025400-147040400 Weak transcription H9 Cell Line embryonic stem cell
9 chr5:147035000-147039400 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr5:147035800-147052800 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr5:147036400-147042000 Strong transcription Cortex derived primary cultured neurospheres brain
12 chr5:147037200-147041400 Strong transcription Fetal Brain Female brain
13 chr5:147037200-147046600 Weak transcription Fetal Intestine Small intestine
14 chr5:147037400-147039400 Strong transcription Fetal Adrenal Gland Adrenal Gland
15 chr5:147037400-147040600 Strong transcription Fetal Thymus thymus
16 chr5:147037400-147040800 Strong transcription Brain Inferior Temporal Lobe brain
17 chr5:147037600-147039400 Strong transcription Thymus Thymus
18 chr5:147037600-147039600 Strong transcription Primary T cells fromperipheralblood blood
19 chr5:147037600-147039800 Enhancers HepG2 liver
20 chr5:147037800-147040400 Weak transcription Fetal Brain Male brain
21 chr5:147037800-147041000 Strong transcription Brain Anterior Caudate brain
22 chr5:147037800-147041200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr5:147038000-147041200 Strong transcription Brain Germinal Matrix brain
24 chr5:147038200-147039400 Strong transcription Brain Substantia Nigra brain
25 chr5:147038200-147039800 Enhancers Fetal Intestine Large intestine
26 chr5:147038200-147044400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr5:147038200-147047800 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr5:147038200-147048600 Weak transcription Primary T killer memory cells from peripheral blood blood
29 chr5:147038400-147041000 Strong transcription Brain Cingulate Gyrus brain
30 chr5:147038600-147042000 Strong transcription HUES48 Cell Line embryonic stem cell
31 chr5:147038600-147042200 Strong transcription iPS-20b Cell Line embryonic stem cell
32 chr5:147038800-147040200 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr5:147038800-147041600 Strong transcription Primary hematopoietic stem cells blood
34 chr5:147038800-147052200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr5:147038800-147053200 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr5:147039000-147039600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr5:147039000-147039600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr5:147039000-147040200 Weak transcription H1 Cell Line embryonic stem cell
39 chr5:147039000-147040400 Weak transcription Primary T cells from cord blood blood
40 chr5:147039000-147040400 Weak transcription Lung lung
41 chr5:147039000-147040800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
42 chr5:147039000-147041000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr5:147039000-147041000 Weak transcription Brain Angular Gyrus brain
44 chr5:147039000-147041200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr5:147039000-147041800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:147039000-147042600 Strong transcription iPS-18 Cell Line embryonic stem cell
47 chr5:147039200-147040000 Enhancers Liver Liver
48 chr5:147039200-147040000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
49 chr5:147039200-147040000 Weak transcription Stomach Smooth Muscle stomach
50 chr5:147039200-147040400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015