The 2.0 version of rSNPBase

Variant report

Variant rs12655190
Chromosome Location chr5:146997849-146997850
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:146957800-147038000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr5:146977400-147012200 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr5:146987800-147001000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr5:146988000-147015000 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr5:146988200-146998200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr5:146988400-147000400 Strong transcription Cortex derived primary cultured neurospheres brain
7 chr5:146989000-147003000 Weak transcription Fetal Muscle Trunk muscle
8 chr5:146990200-147015400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr5:146990400-147004000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr5:146990600-147022600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr5:146990800-147008600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr5:146991400-147014600 Weak transcription Fetal Stomach stomach
13 chr5:146991400-147022800 Weak transcription Stomach Smooth Muscle stomach
14 chr5:146991800-146999200 Strong transcription iPS-18 Cell Line embryonic stem cell
15 chr5:146991800-146999600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
16 chr5:146991800-147001000 Strong transcription HUES64 Cell Line embryonic stem cell
17 chr5:146991800-147002400 Weak transcription Thymus Thymus
18 chr5:146992000-147012200 Weak transcription iPS-15b Cell Line embryonic stem cell
19 chr5:146992200-147013000 Strong transcription iPS-20b Cell Line embryonic stem cell
20 chr5:146992400-147000200 Strong transcription HUES48 Cell Line embryonic stem cell
21 chr5:146992400-147015600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr5:146992800-147000800 Weak transcription Primary T regulatory cells fromperipheralblood blood
23 chr5:146993000-146999400 Strong transcription Brain Angular Gyrus brain
24 chr5:146993400-146999800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr5:146993400-147003600 Weak transcription NH-A brain
26 chr5:146994200-146998000 Strong transcription Brain Hippocampus Middle brain
27 chr5:146994200-147015800 Weak transcription Primary B cells from cord blood blood
28 chr5:146994400-146998000 Strong transcription Brain Germinal Matrix brain
29 chr5:146995200-146998200 Enhancers Fetal Adrenal Gland Adrenal Gland
30 chr5:146995200-147015200 Weak transcription H9 Cell Line embryonic stem cell
31 chr5:146995200-147015200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:146995800-146998000 Enhancers Fetal Lung lung
33 chr5:146995800-147015200 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr5:146995800-147020200 Weak transcription Primary T cells fromperipheralblood blood
35 chr5:146996200-146999400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
36 chr5:146996600-146998800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr5:146996600-146999000 Strong transcription HUES6 Cell Line embryonic stem cell
38 chr5:146996800-146998000 Strong transcription Primary hematopoietic stem cells blood
39 chr5:146997200-146998000 Enhancers Liver Liver
40 chr5:146997200-146999400 Weak transcription H1 Cell Line embryonic stem cell
41 chr5:146997400-147005000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr5:146997600-147000600 Weak transcription Primary T cells from cord blood blood
43 chr5:146997600-147000800 Weak transcription Fetal Brain Female brain
44 chr5:146997600-147002200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr5:146997600-147004800 Weak transcription Brain Anterior Caudate brain
46 chr5:146997600-147005800 Weak transcription Brain Inferior Temporal Lobe brain
47 chr5:146997600-147006000 Weak transcription Brain Substantia Nigra brain
48 chr5:146997600-147015600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr5:146997600-147018600 Weak transcription Fetal Brain Male brain
50 chr5:146997800-147004800 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015