Variant report

Variant	rs6580476
Chromosome Location	chr5:146948846-146948847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10035605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10040051	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10040261	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10044761	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10052305	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10053816	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10070469	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11167995	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12654361	0.89[ASN][1000 genomes]
rs12654501	0.95[ASN][1000 genomes]
rs12654833	0.99[ASN][1000 genomes]
rs12654982	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12655190	0.95[ASN][1000 genomes]
rs12655622	0.95[ASN][1000 genomes]
rs12657616	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12657989	0.95[ASN][1000 genomes]
rs12659844	0.99[ASN][1000 genomes]
rs1368362	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106944	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106946	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106961	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106975	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17495305	0.91[JPT][hapmap]
rs2304037	0.95[ASN][1000 genomes]
rs2304038	0.95[ASN][1000 genomes]
rs2304039	0.95[ASN][1000 genomes]
rs2400345	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3749722	0.99[ASN][1000 genomes]
rs3763087	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3763088	0.95[ASN][1000 genomes]
rs3763089	0.95[ASN][1000 genomes]
rs3763090	0.95[ASN][1000 genomes]
rs3763091	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3763095	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3765007	0.95[ASN][1000 genomes]
rs3765008	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705041	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705180	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705184	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705185	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58292951	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59260415	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6421163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580479	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580481	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580482	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580483	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6867185	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6870396	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6880748	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881661	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73266286	0.96[ASN][1000 genomes]
rs73268103	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268104	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268117	0.95[ASN][1000 genomes]
rs73268122	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268130	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268132	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73268147	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7443154	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7443158	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7444805	0.95[ASN][1000 genomes]
rs7448588	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7449194	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7706268	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7707600	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7713552	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7713571	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7713582	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7728938	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9686374	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs999953	0.85[YRI][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146940200-146952200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146945600-146957400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:146946200-146949800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:146946800-146956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:146947800-146949400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:146948000-146949000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:146948200-146949200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:146948200-146949600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:146948200-146950200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
10	chr5:146948400-146949000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:146948400-146949200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:146948400-146949800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:146948600-146952400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:146948800-146949200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:146948800-146949600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:146948800-146953600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr5:146948800-146954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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