Variant report

Variant	rs6421163
Chromosome Location	chr5:146948587-146948588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10035605	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040051	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10040261	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10044761	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10052305	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10053816	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10070469	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11167995	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12654361	0.87[ASN][1000 genomes]
rs12654501	0.92[ASN][1000 genomes]
rs12654833	0.96[ASN][1000 genomes]
rs12654982	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12655190	0.92[ASN][1000 genomes]
rs12655622	0.92[ASN][1000 genomes]
rs12657616	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12657989	0.92[ASN][1000 genomes]
rs12659844	0.96[ASN][1000 genomes]
rs1368362	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106944	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106946	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106961	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17106975	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17495305	0.91[JPT][hapmap]
rs2304037	0.92[ASN][1000 genomes]
rs2304038	0.92[ASN][1000 genomes]
rs2304039	0.92[ASN][1000 genomes]
rs2400345	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3749722	0.96[ASN][1000 genomes]
rs3763087	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3763088	0.92[ASN][1000 genomes]
rs3763089	0.92[ASN][1000 genomes]
rs3763090	0.92[ASN][1000 genomes]
rs3763091	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3763095	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3765007	0.92[ASN][1000 genomes]
rs3765008	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705041	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4705180	0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705184	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705185	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58292951	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59260415	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580476	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580479	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580481	0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580482	0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6580483	0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867185	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6870396	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6880748	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6881661	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73266286	0.93[ASN][1000 genomes]
rs73268103	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268104	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268117	0.92[ASN][1000 genomes]
rs73268122	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268130	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268132	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268147	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7443154	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7443158	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7444805	0.92[ASN][1000 genomes]
rs7448588	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7449194	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7706268	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7707600	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7713552	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713571	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7713582	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7728938	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9686374	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs999953	0.85[YRI][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146940200-146952200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146945200-146948800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:146945600-146957400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:146946200-146949800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:146946600-146948800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:146946800-146948600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:146946800-146948600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:146946800-146948800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:146946800-146956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:146947200-146948600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:146947400-146948800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:146947600-146948600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:146947600-146948600	Enhancers	Fetal Thymus	thymus
14	chr5:146947800-146948600	Enhancers	Adipose Nuclei	Adipose
15	chr5:146947800-146949400	Enhancers	H9 Cell Line	embryonic stem cell
16	chr5:146948000-146949000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:146948200-146948600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:146948200-146948600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:146948200-146949200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:146948200-146949600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:146948200-146950200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:146948400-146948600	Enhancers	Fetal Muscle Trunk	muscle
23	chr5:146948400-146948800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:146948400-146948800	Enhancers	Fetal Muscle Leg	muscle
25	chr5:146948400-146949000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:146948400-146949200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr5:146948400-146949800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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