The 2.0 version of rSNPBase

Variant report

Variant rs7728938
Chromosome Location chr5:147012918-147012919
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:146957800-147038000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr5:146988000-147015000 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr5:146990200-147015400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr5:146990600-147022600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr5:146991400-147014600 Weak transcription Fetal Stomach stomach
6 chr5:146991400-147022800 Weak transcription Stomach Smooth Muscle stomach
7 chr5:146992200-147013000 Strong transcription iPS-20b Cell Line embryonic stem cell
8 chr5:146992400-147015600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr5:146994200-147015800 Weak transcription Primary B cells from cord blood blood
10 chr5:146995200-147015200 Weak transcription H9 Cell Line embryonic stem cell
11 chr5:146995200-147015200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr5:146995800-147015200 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr5:146995800-147020200 Weak transcription Primary T cells fromperipheralblood blood
14 chr5:146997600-147015600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr5:146997600-147018600 Weak transcription Fetal Brain Male brain
16 chr5:146998000-147015200 Weak transcription Brain Hippocampus Middle brain
17 chr5:146999200-147017800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
18 chr5:146999400-147025400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr5:146999800-147019800 Weak transcription Primary hematopoietic stem cells blood
20 chr5:147002200-147015400 Weak transcription Brain Angular Gyrus brain
21 chr5:147006600-147022400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr5:147006800-147015000 Weak transcription Brain Germinal Matrix brain
23 chr5:147006800-147025200 Weak transcription Fetal Intestine Small intestine
24 chr5:147007000-147015400 Weak transcription Brain Cingulate Gyrus brain
25 chr5:147007200-147018200 Weak transcription Fetal Thymus thymus
26 chr5:147007800-147018600 Weak transcription Fetal Lung lung
27 chr5:147008200-147013000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr5:147008400-147020400 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr5:147009200-147015400 Weak transcription Primary T cells from cord blood blood
30 chr5:147009200-147019400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr5:147009400-147016000 Weak transcription Thymus Thymus
32 chr5:147009400-147027200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr5:147009400-147033200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr5:147009600-147014000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr5:147009600-147015400 Weak transcription Brain Anterior Caudate brain
36 chr5:147009600-147015600 Weak transcription Brain Inferior Temporal Lobe brain
37 chr5:147009800-147051200 Weak transcription Fetal Muscle Trunk muscle
38 chr5:147010200-147013000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr5:147010400-147015200 Weak transcription H1 Cell Line embryonic stem cell
40 chr5:147010800-147028600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr5:147011200-147013800 Strong transcription Cortex derived primary cultured neurospheres brain
42 chr5:147011200-147014200 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr5:147012000-147013200 Enhancers HUES6 Cell Line embryonic stem cell
44 chr5:147012000-147013200 Genic enhancers HUES64 Cell Line embryonic stem cell
45 chr5:147012000-147017000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:147012200-147013200 Enhancers iPS-15b Cell Line embryonic stem cell
47 chr5:147012400-147013000 Enhancers HUES48 Cell Line embryonic stem cell
48 chr5:147012400-147013400 Enhancers Liver Liver
49 chr5:147012400-147016200 Weak transcription Brain Substantia Nigra brain
50 chr5:147012600-147013000 Genic enhancers iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015