Variant report

Variant	rs6580491
Chromosome Location	chr5:147015892-147015893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10037567	0.83[AFR][1000 genomes]
rs10038789	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10039022	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10040051	0.85[AMR][1000 genomes]
rs10040153	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10040261	0.85[AMR][1000 genomes]
rs10044473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045077	1.00[AMR][1000 genomes]
rs10052305	0.85[AMR][1000 genomes]
rs10053816	0.85[AMR][1000 genomes]
rs11167995	0.85[AMR][1000 genomes]
rs12654982	0.85[AMR][1000 genomes]
rs13187867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106942	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106944	0.85[AMR][1000 genomes]
rs17106946	0.85[AMR][1000 genomes]
rs17106958	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106961	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2400345	0.85[AMR][1000 genomes]
rs3763087	0.85[AMR][1000 genomes]
rs3763095	0.81[AFR][1000 genomes]
rs3765008	0.85[AMR][1000 genomes]
rs4705041	0.85[AMR][1000 genomes]
rs4705178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4705180	0.86[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes]
rs4705183	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4705184	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59967655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	0.86[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	0.86[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	0.86[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580484	0.86[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580486	1.00[AMR][1000 genomes]
rs6580487	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580488	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580489	0.83[AFR][1000 genomes]
rs6580490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861316	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870396	0.85[AMR][1000 genomes]
rs6871278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880748	0.85[AMR][1000 genomes]
rs6881661	0.85[AMR][1000 genomes]
rs73268103	0.85[AMR][1000 genomes]
rs73268104	0.85[AMR][1000 genomes]
rs73268106	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268113	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268117	0.85[AMR][1000 genomes]
rs73268120	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268122	0.85[AMR][1000 genomes]
rs73268130	0.85[AMR][1000 genomes]
rs73268132	0.85[AMR][1000 genomes]
rs73268134	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268147	0.81[AFR][1000 genomes]
rs73268168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7443154	0.85[AMR][1000 genomes]
rs7443158	0.85[AMR][1000 genomes]
rs7443883	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7444805	0.85[AMR][1000 genomes]
rs7446754	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7447099	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7447317	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7448588	0.85[AMR][1000 genomes]
rs7449194	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7707600	0.85[AMR][1000 genomes]
rs7710371	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713552	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7728938	0.83[AFR][1000 genomes]
rs7734698	0.85[AMR][1000 genomes]
rs9325046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9686374	0.85[AMR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:146991400-147022800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:146995800-147020200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:146997600-147018600	Weak transcription	Fetal Brain Male	brain
6	chr5:146999200-147017800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:146999400-147025400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:146999800-147019800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:147006600-147022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:147006800-147025200	Weak transcription	Fetal Intestine Small	intestine
11	chr5:147007200-147018200	Weak transcription	Fetal Thymus	thymus
12	chr5:147007800-147018600	Weak transcription	Fetal Lung	lung
13	chr5:147008400-147020400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:147009200-147019400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:147009400-147016000	Weak transcription	Thymus	Thymus
16	chr5:147009400-147027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:147009400-147033200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:147010800-147028600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:147012000-147017000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:147012400-147016200	Weak transcription	Brain Substantia Nigra	brain
22	chr5:147013000-147027400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:147013000-147030200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:147013000-147038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:147013200-147024600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr5:147013600-147025800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:147013800-147016400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:147014000-147029800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:147014000-147030400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:147014200-147016800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:147014200-147030400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:147014600-147016600	Strong transcription	Fetal Stomach	stomach
33	chr5:147015000-147016400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:147015000-147016800	Strong transcription	Brain Germinal Matrix	brain
35	chr5:147015000-147030000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr5:147015200-147016400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:147015200-147016600	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr5:147015200-147016600	Strong transcription	Brain Hippocampus Middle	brain
39	chr5:147015200-147029000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr5:147015400-147016600	Strong transcription	Primary T cells from cord blood	blood
41	chr5:147015400-147016600	Strong transcription	Brain Anterior Caudate	brain
42	chr5:147015400-147016600	Strong transcription	Fetal Brain Female	brain
43	chr5:147015400-147025600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:147015400-147050000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:147015600-147016000	Flanking Active TSS	Liver	Liver
46	chr5:147015600-147016200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:147015600-147016200	Enhancers	Esophagus	oesophagus
48	chr5:147015600-147016600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr5:147015600-147016600	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr5:147015800-147016000	Enhancers	Pancreatic Islets	Pancreatic Islet

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