Variant report

Variant	rs10040153
Chromosome Location	chr5:146972995-146972996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10037567	0.95[AFR][1000 genomes]
rs10038789	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039022	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040051	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10040261	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10044473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045077	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052305	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10053816	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10070469	0.86[AFR][1000 genomes]
rs11167995	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11543576	0.82[AFR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11950394	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs12654982	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12657616	0.83[AFR][1000 genomes]
rs13187867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1368362	0.81[AFR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106944	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106946	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106961	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs2400345	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763087	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763091	0.81[AFR][1000 genomes]
rs3765008	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705041	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705180	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705184	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs58292951	0.81[AFR][1000 genomes]
rs58633172	1.00[EUR][1000 genomes]
rs59260415	0.81[AFR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs59967655	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580484	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580485	1.00[AMR][1000 genomes]
rs6580486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580488	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580489	0.95[AFR][1000 genomes]
rs6580490	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580491	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870396	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6871278	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880281	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880748	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6881661	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268103	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268104	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268113	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268117	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268120	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268122	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268130	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268132	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73268168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270115	1.00[EUR][1000 genomes]
rs73270116	1.00[EUR][1000 genomes]
rs73270118	1.00[EUR][1000 genomes]
rs73270121	1.00[EUR][1000 genomes]
rs73270124	1.00[EUR][1000 genomes]
rs7443154	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443158	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7444805	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7446754	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7448588	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7449194	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706268	0.81[AFR][1000 genomes]
rs7707600	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713552	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7734698	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9325046	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9686374	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146954600-146974000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:146954800-146973800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:146958000-146973600	Weak transcription	Brain Substantia Nigra	brain
6	chr5:146967400-146990400	Weak transcription	Fetal Brain Male	brain
7	chr5:146968600-146973800	Weak transcription	Fetal Thymus	thymus
8	chr5:146969000-146973800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:146969200-146973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:146969600-146984000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:146969600-146989800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:146970000-146974400	Strong transcription	Fetal Brain Female	brain
13	chr5:146970000-146977200	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:146970400-146973400	Strong transcription	Brain Germinal Matrix	brain
15	chr5:146970400-146976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:146970600-146973800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:146970600-146982600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr5:146970600-146993000	Weak transcription	Brain Angular Gyrus	brain
19	chr5:146970800-146984200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:146971000-146973800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:146971000-146984200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:146971200-146974000	Weak transcription	Fetal Lung	lung
23	chr5:146971200-146974200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:146971200-146979200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:146971200-146990000	Weak transcription	Brain Anterior Caudate	brain
26	chr5:146971200-146990800	Weak transcription	Thymus	Thymus
27	chr5:146971400-146973800	Weak transcription	Liver	Liver
28	chr5:146971600-146984200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr5:146971800-146973800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:146971800-146975200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:146972000-146978000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:146972200-146983200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:146972400-146973200	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr5:146972400-146973400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:146972400-146974600	Strong transcription	Primary T cells from cord blood	blood
36	chr5:146972600-146973000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:146972600-146973200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:146972600-146981400	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr5:146972800-146990400	Weak transcription	Brain Hippocampus Middle	brain

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