Variant report

Variant	rs6580484
Chromosome Location	chr5:146970528-146970529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:146970286..146972731-chr5:146975351..146977170,2	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10037567	0.93[AFR][1000 genomes]
rs10038789	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039022	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040051	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10040153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040261	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10044473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045077	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052305	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10053816	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10070469	0.84[AFR][1000 genomes]
rs11167995	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11950394	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs12654982	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12657616	0.80[AFR][1000 genomes]
rs13187867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106944	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106946	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106958	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106961	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs2400345	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763087	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3765008	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705041	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705178	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705180	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705184	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs58633172	1.00[EUR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs59967655	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580485	1.00[AMR][1000 genomes]
rs6580486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580488	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580489	0.93[AFR][1000 genomes]
rs6580490	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580491	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870396	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6871278	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880748	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6881661	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268103	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268104	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268117	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268120	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268122	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268130	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268132	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73268168	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270115	1.00[EUR][1000 genomes]
rs73270116	1.00[EUR][1000 genomes]
rs73270118	1.00[EUR][1000 genomes]
rs73270121	1.00[EUR][1000 genomes]
rs73270124	1.00[EUR][1000 genomes]
rs7443154	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443158	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443883	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7444805	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7446754	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447099	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7448588	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7449194	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7707600	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713552	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7734698	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9325046	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9686374	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146954600-146974000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:146954800-146973800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:146958000-146973600	Weak transcription	Brain Substantia Nigra	brain
6	chr5:146958200-146972200	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:146958200-146972400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:146963000-146971800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:146963400-146971800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:146964400-146970800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:146964400-146972000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:146964400-146972600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:146967400-146990400	Weak transcription	Fetal Brain Male	brain
14	chr5:146967600-146972400	Weak transcription	Primary T cells from cord blood	blood
15	chr5:146968600-146973800	Weak transcription	Fetal Thymus	thymus
16	chr5:146968800-146970600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:146969000-146971200	Enhancers	Fetal Lung	lung
18	chr5:146969000-146971800	Weak transcription	Primary B cells from cord blood	blood
19	chr5:146969000-146973800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:146969200-146972400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:146969200-146973800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:146969400-146970800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:146969600-146972600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:146969600-146984000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:146969600-146989800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr5:146969800-146970600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr5:146969800-146970600	Strong transcription	Primary hematopoietic stem cells	blood
28	chr5:146970000-146970600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:146970000-146974400	Strong transcription	Fetal Brain Female	brain
30	chr5:146970000-146977200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr5:146970200-146971200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:146970200-146971200	Strong transcription	Brain Anterior Caudate	brain
33	chr5:146970400-146970600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:146970400-146970600	Enhancers	Brain Angular Gyrus	brain
35	chr5:146970400-146970800	Active TSS	Ovary	ovary
36	chr5:146970400-146971200	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:146970400-146971200	Strong transcription	Thymus	Thymus
38	chr5:146970400-146973400	Strong transcription	Brain Germinal Matrix	brain
39	chr5:146970400-146976800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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