Variant report

Variant	rs6580490
Chromosome Location	chr5:146998176-146998177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10037567	0.88[AFR][1000 genomes]
rs10038789	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039022	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040051	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10040153	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040261	0.85[AMR][1000 genomes]
rs10044473	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045077	1.00[AMR][1000 genomes]
rs10052305	0.85[AMR][1000 genomes]
rs10053816	0.85[AMR][1000 genomes]
rs11167995	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs12654982	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12657616	0.81[AFR][1000 genomes]
rs13187867	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1368362	0.82[AFR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106942	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106944	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106946	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106961	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106975	0.85[AFR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs2400345	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763087	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763091	0.82[AFR][1000 genomes]
rs3763095	0.86[AFR][1000 genomes]
rs3765008	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705041	0.85[AMR][1000 genomes]
rs4705178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705180	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705184	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs58292951	0.82[AFR][1000 genomes]
rs58633172	1.00[EUR][1000 genomes]
rs59260415	0.82[AFR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs59967655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580485	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580486	1.00[AMR][1000 genomes]
rs6580487	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580489	0.88[AFR][1000 genomes]
rs6580491	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870396	0.85[AMR][1000 genomes]
rs6871278	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880281	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880748	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6881661	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268103	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268104	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268106	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268117	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268122	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268130	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268132	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268134	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73268147	0.85[AFR][1000 genomes]
rs73268168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270115	1.00[EUR][1000 genomes]
rs73270116	1.00[EUR][1000 genomes]
rs73270118	1.00[EUR][1000 genomes]
rs73270121	1.00[EUR][1000 genomes]
rs73270124	1.00[EUR][1000 genomes]
rs7443154	0.85[AMR][1000 genomes]
rs7443158	0.85[AMR][1000 genomes]
rs7443883	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7444805	0.85[AMR][1000 genomes]
rs7446754	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447099	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7448588	0.85[AMR][1000 genomes]
rs7449194	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706268	0.82[AFR][1000 genomes]
rs7707600	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713552	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7728938	0.88[AFR][1000 genomes]
rs7734698	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9325046	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9686374	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146977400-147012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:146987800-147001000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:146988200-146998200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:146988400-147000400	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:146989000-147003000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:146990200-147015400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:146990400-147004000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:146990800-147008600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:146991400-147014600	Weak transcription	Fetal Stomach	stomach
13	chr5:146991400-147022800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr5:146991800-146999200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:146991800-146999600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:146991800-147001000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:146991800-147002400	Weak transcription	Thymus	Thymus
18	chr5:146992000-147012200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr5:146992200-147013000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr5:146992400-147000200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr5:146992400-147015600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:146992800-147000800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:146993000-146999400	Strong transcription	Brain Angular Gyrus	brain
24	chr5:146993400-146999800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:146993400-147003600	Weak transcription	NH-A	brain
26	chr5:146994200-147015800	Weak transcription	Primary B cells from cord blood	blood
27	chr5:146995200-146998200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr5:146995200-147015200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:146995200-147015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:146995800-147015200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr5:146995800-147020200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr5:146996200-146999400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:146996600-146998800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:146996600-146999000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:146997200-146999400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:146997400-147005000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:146997600-147000600	Weak transcription	Primary T cells from cord blood	blood
38	chr5:146997600-147000800	Weak transcription	Fetal Brain Female	brain
39	chr5:146997600-147002200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:146997600-147004800	Weak transcription	Brain Anterior Caudate	brain
41	chr5:146997600-147005800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr5:146997600-147006000	Weak transcription	Brain Substantia Nigra	brain
43	chr5:146997600-147015600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:146997600-147018600	Weak transcription	Fetal Brain Male	brain
45	chr5:146997800-147004800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:146997800-147006200	Weak transcription	Fetal Thymus	thymus
47	chr5:146998000-146998800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr5:146998000-146999000	Weak transcription	Brain Germinal Matrix	brain
49	chr5:146998000-147000600	Weak transcription	Fetal Lung	lung
50	chr5:146998000-147007800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links