Variant report

Variant	rs10039022
Chromosome Location	chr5:146991452-146991453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10037567	0.96[AFR][1000 genomes]
rs10038789	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10040051	0.89[AFR][1000 genomes]
rs10040153	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040261	0.87[AFR][1000 genomes]
rs10044473	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045077	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10052305	0.87[AFR][1000 genomes]
rs10053816	0.87[AFR][1000 genomes]
rs10070469	0.87[AFR][1000 genomes]
rs11167995	0.89[AFR][1000 genomes]
rs11543576	0.83[AFR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs12654982	0.89[AFR][1000 genomes]
rs12657616	0.82[AFR][1000 genomes]
rs13187867	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1368362	0.83[AFR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106942	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106944	0.89[AFR][1000 genomes]
rs17106946	0.89[AFR][1000 genomes]
rs17106958	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106961	0.95[AFR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs17107095	0.83[AMR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs2400345	0.89[AFR][1000 genomes]
rs3763087	0.89[AFR][1000 genomes]
rs3763091	0.83[AFR][1000 genomes]
rs3765008	0.86[AFR][1000 genomes]
rs4705041	0.87[AFR][1000 genomes]
rs4705178	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705180	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705184	0.96[AFR][1000 genomes]
rs4705185	0.96[AFR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs58292951	0.83[AFR][1000 genomes]
rs58633172	1.00[EUR][1000 genomes]
rs59260415	0.83[AFR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs59967655	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580481	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6580482	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6580483	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6580484	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580485	0.83[AMR][1000 genomes]
rs6580486	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6580487	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580488	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580489	0.96[AFR][1000 genomes]
rs6580490	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580491	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870396	0.87[AFR][1000 genomes]
rs6871278	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6880281	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880748	0.89[AFR][1000 genomes]
rs6881661	0.89[AFR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268103	0.89[AFR][1000 genomes]
rs73268104	0.89[AFR][1000 genomes]
rs73268106	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268113	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268117	0.89[AFR][1000 genomes]
rs73268120	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268122	0.89[AFR][1000 genomes]
rs73268130	0.89[AFR][1000 genomes]
rs73268132	0.86[AFR][1000 genomes]
rs73268134	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73268168	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73270115	1.00[EUR][1000 genomes]
rs73270116	1.00[EUR][1000 genomes]
rs73270118	1.00[EUR][1000 genomes]
rs73270121	1.00[EUR][1000 genomes]
rs73270124	1.00[EUR][1000 genomes]
rs7443154	0.87[AFR][1000 genomes]
rs7443158	0.85[AFR][1000 genomes]
rs7443883	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7444805	0.87[AFR][1000 genomes]
rs7446754	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7447099	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447317	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7448588	0.87[AFR][1000 genomes]
rs7449194	0.96[AFR][1000 genomes]
rs7700567	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706268	0.83[AFR][1000 genomes]
rs7707600	0.89[AFR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7713552	0.96[AFR][1000 genomes]
rs7713571	0.96[AFR][1000 genomes]
rs7713582	0.96[AFR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7734698	1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9325046	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9686374	0.88[AFR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:146970600-146993000	Weak transcription	Brain Angular Gyrus	brain
4	chr5:146973600-146994800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:146974800-146992600	Weak transcription	Fetal Lung	lung
6	chr5:146977400-147012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:146987800-147001000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:146988200-146998200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:146988400-146993000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:146988400-147000400	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:146989000-147003000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr5:146989400-146992400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:146989600-146992200	Strong transcription	Brain Substantia Nigra	brain
15	chr5:146989800-146991800	Strong transcription	Brain Cingulate Gyrus	brain
16	chr5:146989800-146992000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:146990000-146991600	Strong transcription	Fetal Brain Female	brain
18	chr5:146990000-146991800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:146990000-146991800	Strong transcription	Brain Anterior Caudate	brain
20	chr5:146990000-146991800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:146990000-146992400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:146990000-146992600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:146990200-146991600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:146990200-146991600	Strong transcription	Brain Germinal Matrix	brain
25	chr5:146990200-147015400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr5:146990400-146991600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:146990400-146991800	Strong transcription	Brain Hippocampus Middle	brain
28	chr5:146990400-146992400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:146990400-146992400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:146990400-146992400	Strong transcription	Fetal Brain Male	brain
31	chr5:146990400-147004000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:146990600-146992200	Strong transcription	Primary hematopoietic stem cells	blood
33	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:146990800-146991600	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr5:146990800-146991800	Strong transcription	Thymus	Thymus
36	chr5:146990800-146992200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr5:146990800-146994400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr5:146990800-147008600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr5:146991000-146991800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:146991000-146996000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:146991200-146991600	Strong transcription	Fetal Thymus	thymus
42	chr5:146991200-146992200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr5:146991200-146992400	Strong transcription	Primary T cells from cord blood	blood
44	chr5:146991400-146991800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr5:146991400-146992400	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr5:146991400-146993600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr5:146991400-146994800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr5:146991400-147014600	Weak transcription	Fetal Stomach	stomach
49	chr5:146991400-147022800	Weak transcription	Stomach Smooth Muscle	stomach

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