Variant report

Variant	rs10045077
Chromosome Location	chr5:146989598-146989599
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10037567	0.83[AFR][1000 genomes]
rs10038789	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10039022	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10040051	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10040153	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10040261	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10044473	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052305	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10053816	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10070469	0.97[AFR][1000 genomes]
rs11167995	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12654982	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12657616	0.84[AFR][1000 genomes]
rs13187867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1368362	0.85[AFR][1000 genomes]
rs17106942	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106944	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106946	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106958	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106961	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes]
rs2400345	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763087	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763091	0.85[AFR][1000 genomes]
rs3763095	0.81[AFR][1000 genomes]
rs3765008	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705041	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705178	1.00[AMR][1000 genomes]
rs4705180	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705183	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4705184	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs58292951	0.85[AFR][1000 genomes]
rs59260415	0.85[AFR][1000 genomes]
rs59967655	1.00[AMR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580484	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580485	1.00[AMR][1000 genomes]
rs6580486	1.00[AMR][1000 genomes]
rs6580487	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580488	1.00[AMR][1000 genomes]
rs6580489	0.88[AFR][1000 genomes]
rs6580490	1.00[AMR][1000 genomes]
rs6580491	1.00[AMR][1000 genomes]
rs6861316	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6870396	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6871278	1.00[AMR][1000 genomes]
rs6880281	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880748	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6881661	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268103	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268104	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268106	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268113	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268117	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268120	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268122	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268130	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268132	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268134	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268168	1.00[AMR][1000 genomes]
rs7443154	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443158	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443883	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7444805	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7446754	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7447099	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7447317	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7448588	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7449194	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	1.00[AMR][1000 genomes]
rs7706268	0.85[AFR][1000 genomes]
rs7707600	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7710371	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713552	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7734698	0.85[AMR][1000 genomes]
rs9325046	1.00[AMR][1000 genomes]
rs9686374	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:146967400-146990400	Weak transcription	Fetal Brain Male	brain
4	chr5:146969600-146989800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:146970600-146993000	Weak transcription	Brain Angular Gyrus	brain
6	chr5:146971200-146990000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:146971200-146990800	Weak transcription	Thymus	Thymus
8	chr5:146972800-146990400	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:146973400-146991000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:146973600-146994800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:146974000-146990400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:146974400-146990000	Weak transcription	Fetal Brain Female	brain
13	chr5:146974400-146990200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:146974800-146992600	Weak transcription	Fetal Lung	lung
15	chr5:146975000-146989800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:146975200-146989600	Weak transcription	Brain Substantia Nigra	brain
17	chr5:146975200-146990000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:146976000-146990000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:146976200-146991200	Weak transcription	Primary T cells from cord blood	blood
20	chr5:146977400-147012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:146977600-146991000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:146978000-146989600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:146979000-146989800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:146980800-146990200	Weak transcription	Brain Germinal Matrix	brain
25	chr5:146981000-146990400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:146981400-146990200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:146983200-146990200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:146984000-146990400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:146984000-146990400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:146984200-146989600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr5:146984200-146990000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:146984200-146990000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:146984200-146990000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:146987800-147001000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:146988000-146990600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:146988200-146990600	Weak transcription	Fetal Thymus	thymus
38	chr5:146988200-146998200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:146988400-146993000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:146988400-147000400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr5:146988600-146990400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:146988800-146990400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr5:146989000-147003000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr5:146989400-146990000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:146989400-146990000	Weak transcription	Fetal Stomach	stomach
46	chr5:146989400-146992400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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