Variant report

Variant	rs12657616
Chromosome Location	chr5:147011547-147011548
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10035605	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10037567	0.80[AFR][1000 genomes]
rs10038789	0.84[AFR][1000 genomes]
rs10039022	0.82[AFR][1000 genomes]
rs10040051	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040153	0.83[AFR][1000 genomes]
rs10040261	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044473	0.83[AFR][1000 genomes]
rs10044761	0.94[ASN][1000 genomes]
rs10045077	0.84[AFR][1000 genomes]
rs10052305	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053816	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070469	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167995	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654361	0.87[ASN][1000 genomes]
rs12654501	1.00[ASN][1000 genomes]
rs12654833	0.96[ASN][1000 genomes]
rs12654982	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12655190	1.00[ASN][1000 genomes]
rs12655622	1.00[ASN][1000 genomes]
rs12656104	0.84[ASN][1000 genomes]
rs12657989	1.00[ASN][1000 genomes]
rs12659844	0.96[ASN][1000 genomes]
rs13172946	0.82[ASN][1000 genomes]
rs13187867	0.83[AFR][1000 genomes]
rs1368362	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106942	0.83[AFR][1000 genomes]
rs17106944	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106946	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106958	0.86[AFR][1000 genomes]
rs17106961	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106975	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17495305	0.91[JPT][hapmap]
rs2053050	0.82[ASN][1000 genomes]
rs2053052	0.82[ASN][1000 genomes]
rs2304037	1.00[ASN][1000 genomes]
rs2304038	1.00[ASN][1000 genomes]
rs2304039	1.00[ASN][1000 genomes]
rs2400345	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35285805	0.82[ASN][1000 genomes]
rs3749722	0.96[ASN][1000 genomes]
rs3763087	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763088	1.00[ASN][1000 genomes]
rs3763089	1.00[ASN][1000 genomes]
rs3763090	1.00[ASN][1000 genomes]
rs3763091	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765007	1.00[ASN][1000 genomes]
rs3765008	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705041	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705183	0.83[AFR][1000 genomes]
rs4705184	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705185	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705189	0.80[ASN][1000 genomes]
rs58292951	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59260415	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6421163	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580476	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580479	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580484	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs6580487	0.83[AFR][1000 genomes]
rs6580488	0.81[AFR][1000 genomes]
rs6580489	0.80[AFR][1000 genomes]
rs6580490	0.81[AFR][1000 genomes]
rs6861316	0.82[AFR][1000 genomes]
rs6867185	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6870396	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6880748	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881661	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73266286	0.99[ASN][1000 genomes]
rs73268103	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268104	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268106	0.83[AFR][1000 genomes]
rs73268113	0.83[AFR][1000 genomes]
rs73268117	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73268120	0.83[AFR][1000 genomes]
rs73268122	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268130	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268132	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268134	0.86[AFR][1000 genomes]
rs73268147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7443154	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7443158	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7443883	0.83[AFR][1000 genomes]
rs7444805	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7446754	0.80[AFR][1000 genomes]
rs7447099	0.83[AFR][1000 genomes]
rs7447317	0.83[AFR][1000 genomes]
rs7448588	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7449194	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7706268	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707600	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710371	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7713552	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7713571	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7713582	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7715897	0.87[AFR][1000 genomes]
rs7728938	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7734698	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9686374	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999953	0.85[YRI][hapmap]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146977400-147012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:146990200-147015400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:146991400-147014600	Weak transcription	Fetal Stomach	stomach
7	chr5:146991400-147022800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:146992000-147012200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:146992200-147013000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:146992400-147015600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:146994200-147015800	Weak transcription	Primary B cells from cord blood	blood
12	chr5:146995200-147015200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:146995200-147015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:146995800-147015200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:146995800-147020200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:146997600-147015600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:146997600-147018600	Weak transcription	Fetal Brain Male	brain
18	chr5:146998000-147015200	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:146999200-147017800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:146999400-147025400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:146999800-147019800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:147002200-147015400	Weak transcription	Brain Angular Gyrus	brain
23	chr5:147002600-147012000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:147006600-147012000	Weak transcription	Brain Substantia Nigra	brain
25	chr5:147006600-147022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:147006800-147015000	Weak transcription	Brain Germinal Matrix	brain
27	chr5:147006800-147025200	Weak transcription	Fetal Intestine Small	intestine
28	chr5:147007000-147015400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:147007200-147018200	Weak transcription	Fetal Thymus	thymus
30	chr5:147007800-147018600	Weak transcription	Fetal Lung	lung
31	chr5:147008200-147013000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:147008400-147012400	Weak transcription	Liver	Liver
33	chr5:147008400-147020400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:147008800-147012600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:147009200-147015400	Weak transcription	Primary T cells from cord blood	blood
36	chr5:147009200-147019400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr5:147009400-147012000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:147009400-147016000	Weak transcription	Thymus	Thymus
39	chr5:147009400-147027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:147009400-147033200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr5:147009600-147014000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:147009600-147015400	Weak transcription	Brain Anterior Caudate	brain
43	chr5:147009600-147015600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr5:147010200-147012000	Weak transcription	Fetal Brain Female	brain
46	chr5:147010200-147013000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr5:147010400-147015200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr5:147010800-147028600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr5:147011000-147012400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr5:147011200-147012000	Enhancers	HUES64 Cell Line	embryonic stem cell

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