Variant report

Variant	rs6580479
Chromosome Location	chr5:146953973-146953974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10035605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10040051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040153	0.85[AMR][1000 genomes]
rs10040261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10044473	0.85[AMR][1000 genomes]
rs10044761	0.97[ASN][1000 genomes]
rs10045077	0.85[AMR][1000 genomes]
rs10052305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10053816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070469	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11167995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654361	0.90[ASN][1000 genomes]
rs12654501	0.96[ASN][1000 genomes]
rs12654833	1.00[ASN][1000 genomes]
rs12654982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655190	0.96[ASN][1000 genomes]
rs12655622	0.96[ASN][1000 genomes]
rs12656104	0.81[ASN][1000 genomes]
rs12657616	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657989	0.96[ASN][1000 genomes]
rs12659844	1.00[ASN][1000 genomes]
rs13187867	0.85[AMR][1000 genomes]
rs1368362	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106942	0.85[AMR][1000 genomes]
rs17106944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106958	0.85[AMR][1000 genomes]
rs17106961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106975	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107095	0.85[AMR][1000 genomes]
rs17495305	0.91[JPT][hapmap]
rs2304037	0.96[ASN][1000 genomes]
rs2304038	0.96[ASN][1000 genomes]
rs2304039	0.96[ASN][1000 genomes]
rs2400345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3749722	1.00[ASN][1000 genomes]
rs3763087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763088	0.96[ASN][1000 genomes]
rs3763089	0.96[ASN][1000 genomes]
rs3763090	0.96[ASN][1000 genomes]
rs3763091	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763095	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3765007	0.96[ASN][1000 genomes]
rs3765008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705178	0.85[AMR][1000 genomes]
rs4705180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705183	0.85[AMR][1000 genomes]
rs4705184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58292951	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59260415	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59967655	0.85[AMR][1000 genomes]
rs6421163	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580476	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6580484	0.81[YRI][hapmap];0.85[AMR][1000 genomes]
rs6580485	0.85[AMR][1000 genomes]
rs6580486	0.85[AMR][1000 genomes]
rs6580487	0.85[AMR][1000 genomes]
rs6580488	0.85[AMR][1000 genomes]
rs6580490	0.85[AMR][1000 genomes]
rs6580491	0.85[AMR][1000 genomes]
rs6861316	0.85[AMR][1000 genomes]
rs6867185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871278	0.85[AMR][1000 genomes]
rs6880281	0.85[AMR][1000 genomes]
rs6880748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6881661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73266286	0.97[ASN][1000 genomes]
rs73268103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268106	0.85[AMR][1000 genomes]
rs73268113	0.85[AMR][1000 genomes]
rs73268117	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73268120	0.85[AMR][1000 genomes]
rs73268122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268134	0.85[AMR][1000 genomes]
rs73268147	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73268168	0.85[AMR][1000 genomes]
rs7443154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7443158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7443883	0.85[AMR][1000 genomes]
rs7444805	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7447099	0.85[AMR][1000 genomes]
rs7447317	0.85[AMR][1000 genomes]
rs7448588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7449194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7700567	0.85[AMR][1000 genomes]
rs7706268	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7707600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7713552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7713571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7713582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7728938	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9325046	0.85[AMR][1000 genomes]
rs9686374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146945600-146957400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:146946800-146956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:146948800-146954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:146950800-146954800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:146950800-146955000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:146950800-146956200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:146951000-146955000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:146951000-146955200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:146951600-146954800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:146951600-146955000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:146951800-146955000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:146952200-146954200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:146952200-146955000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:146952400-146954600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:146952400-146954600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:146952400-146954800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:146953200-146954200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:146953400-146954800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr5:146953600-146954400	Enhancers	Ovary	ovary
20	chr5:146953600-146954600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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