Variant report

Variant	rs9325046
Chromosome Location	chr5:146962917-146962918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:146962192..146964294-chr5:146966665..146969125,3	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10037567	0.84[AFR][1000 genomes]
rs10038789	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039022	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040051	0.85[AMR][1000 genomes]
rs10040153	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040261	0.85[AMR][1000 genomes]
rs10044473	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045077	1.00[AMR][1000 genomes]
rs10052305	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10053816	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11167995	0.85[AMR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11950394	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs12654982	0.85[AMR][1000 genomes]
rs13187867	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106942	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106944	0.85[AMR][1000 genomes]
rs17106946	0.85[AMR][1000 genomes]
rs17106958	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106961	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106975	0.81[AFR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs2400345	0.85[AMR][1000 genomes]
rs3763087	0.85[AMR][1000 genomes]
rs3763095	0.82[AFR][1000 genomes]
rs3765008	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705041	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705180	0.86[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705184	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs58633172	1.00[EUR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs59967655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	0.86[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	0.86[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	0.86[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580484	0.86[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580485	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580486	1.00[AMR][1000 genomes]
rs6580487	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580488	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580489	0.84[AFR][1000 genomes]
rs6580490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580491	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870396	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6871278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880281	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880748	0.85[AMR][1000 genomes]
rs6881661	0.85[AMR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268103	0.85[AMR][1000 genomes]
rs73268104	0.85[AMR][1000 genomes]
rs73268106	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268113	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268117	0.85[AMR][1000 genomes]
rs73268120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268122	0.85[AMR][1000 genomes]
rs73268130	0.85[AMR][1000 genomes]
rs73268132	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268134	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73268147	0.82[AFR][1000 genomes]
rs73268168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270115	1.00[EUR][1000 genomes]
rs73270116	1.00[EUR][1000 genomes]
rs73270118	1.00[EUR][1000 genomes]
rs73270121	1.00[EUR][1000 genomes]
rs73270124	1.00[EUR][1000 genomes]
rs7443154	0.85[AMR][1000 genomes]
rs7443158	0.85[AMR][1000 genomes]
rs7443883	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7444805	0.85[AMR][1000 genomes]
rs7446754	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447099	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447317	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7448588	0.85[AMR][1000 genomes]
rs7449194	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7707600	0.85[AMR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713552	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7728938	0.84[AFR][1000 genomes]
rs7734698	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9686374	0.85[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146954600-146974000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:146954800-146973800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:146957000-146996200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:146957600-146963400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:146958000-146973600	Weak transcription	Brain Substantia Nigra	brain
7	chr5:146958200-146972200	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:146958200-146972400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:146958600-146969000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:146960400-146970400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:146960600-146963400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:146961000-146970200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:146961800-146963000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:146961800-146969800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:146962600-146963000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:146962800-146963000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:146962800-146963400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:146962800-146964600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr5:146962800-146965400	Strong transcription	HUES48 Cell Line	embryonic stem cell

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