Variant report

Variant	rs58633172
Chromosome Location	chr5:146833022-146833023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10038789	1.00[EUR][1000 genomes]
rs10039022	1.00[EUR][1000 genomes]
rs10040153	1.00[EUR][1000 genomes]
rs10044473	1.00[EUR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11950394	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs13187867	1.00[EUR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106743	0.87[AFR][1000 genomes]
rs17106761	0.82[AFR][1000 genomes]
rs17106765	0.88[AFR][1000 genomes]
rs17106942	1.00[EUR][1000 genomes]
rs17106958	1.00[EUR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs4705178	1.00[EUR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	1.00[EUR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs57782659	0.90[AFR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580484	1.00[EUR][1000 genomes]
rs6580487	1.00[EUR][1000 genomes]
rs6580488	1.00[EUR][1000 genomes]
rs6580490	1.00[EUR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	1.00[EUR][1000 genomes]
rs6880281	1.00[EUR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268106	1.00[EUR][1000 genomes]
rs73268113	1.00[EUR][1000 genomes]
rs73268120	1.00[EUR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73794725	0.81[AFR][1000 genomes]
rs73794728	0.83[AFR][1000 genomes]
rs73794730	0.83[AFR][1000 genomes]
rs73794763	0.85[AFR][1000 genomes]
rs7443883	1.00[EUR][1000 genomes]
rs7446754	1.00[EUR][1000 genomes]
rs7447099	1.00[EUR][1000 genomes]
rs7447317	1.00[EUR][1000 genomes]
rs7700567	1.00[EUR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	1.00[EUR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7716469	0.87[AFR][1000 genomes]
rs7734698	1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9325046	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146830400-146834200	Active TSS	Fetal Brain Male	brain
2	chr5:146830600-146834000	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr5:146830800-146834200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:146831000-146834400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:146831000-146835000	Active TSS	Aorta	Aorta
6	chr5:146831200-146834000	Active TSS	H1 Cell Line	embryonic stem cell
7	chr5:146831200-146834200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr5:146831200-146834200	Active TSS	Ovary	ovary
9	chr5:146831200-146834200	Active TSS	Rectal Smooth Muscle	rectum
10	chr5:146831200-146835000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr5:146831200-146835400	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr5:146831400-146834000	Active TSS	H9 Cell Line	embryonic stem cell
13	chr5:146831400-146834000	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr5:146831400-146834200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:146831600-146833200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
16	chr5:146831600-146833200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
17	chr5:146831600-146834000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
18	chr5:146831600-146834000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
19	chr5:146831600-146834200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:146831600-146834200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:146831600-146834200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:146831800-146833200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:146831800-146833200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
24	chr5:146831800-146833400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr5:146831800-146834000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:146831800-146834000	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr5:146831800-146834000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:146831800-146834200	Active TSS	Colon Smooth Muscle	Colon
29	chr5:146831800-146834800	Active TSS	Stomach Smooth Muscle	stomach
30	chr5:146831800-146835000	Active TSS	Right Atrium	heart
31	chr5:146831800-146835000	Active TSS	NHLF	lung
32	chr5:146832000-146833200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
33	chr5:146832000-146833200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr5:146832000-146834000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:146832000-146834000	Active TSS	Lung	lung
36	chr5:146832000-146834000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
37	chr5:146832000-146834000	Active TSS	NH-A	brain
38	chr5:146832000-146834200	Active TSS	Psoas Muscle	Psoas
39	chr5:146832200-146833200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr5:146832200-146833200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
41	chr5:146832200-146833200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
42	chr5:146832200-146833200	Flanking Bivalent TSS/Enh	HMEC	breast
43	chr5:146832200-146833200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
44	chr5:146832200-146833400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
45	chr5:146832200-146834000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:146832200-146834000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
47	chr5:146832400-146833200	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
48	chr5:146832400-146833200	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr5:146832400-146833200	Flanking Active TSS	Pancreas	Pancrea
50	chr5:146832400-146833400	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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