Variant report

Variant	rs73794725
Chromosome Location	chr5:146812966-146812967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12657083	0.99[AFR][1000 genomes]
rs12657176	0.97[AFR][1000 genomes]
rs17106743	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106761	0.85[AFR][1000 genomes]
rs17106765	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57782659	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58633172	0.81[AFR][1000 genomes]
rs73794726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794763	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7716469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146798200-146815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:146799000-146818400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:146804400-146815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:146805800-146819200	Enhancers	Colon Smooth Muscle	Colon
6	chr5:146806000-146814800	Enhancers	Fetal Brain Male	brain
7	chr5:146808000-146816200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:146808200-146816400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:146808200-146816600	Weak transcription	Osteobl	bone
10	chr5:146808200-146818800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:146809000-146816600	Weak transcription	Esophagus	oesophagus
12	chr5:146809400-146819200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:146809800-146814000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:146810000-146823400	Weak transcription	Small Intestine	intestine
15	chr5:146810400-146813200	Enhancers	Fetal Brain Female	brain
16	chr5:146810400-146815600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr5:146810800-146813400	Enhancers	Ovary	ovary
18	chr5:146810800-146814200	Enhancers	Fetal Intestine Large	intestine
19	chr5:146810800-146817600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:146810800-146819400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:146810800-146822600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:146811000-146813200	Genic enhancers	Brain Germinal Matrix	brain
23	chr5:146811200-146813000	Enhancers	Left Ventricle	heart
24	chr5:146811400-146813000	Enhancers	Fetal Intestine Small	intestine
25	chr5:146811400-146818800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr5:146811600-146815400	Weak transcription	Brain Anterior Caudate	brain
27	chr5:146811600-146815400	Weak transcription	Lung	lung
28	chr5:146811600-146815600	Weak transcription	NH-A	brain
29	chr5:146811600-146818800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:146811800-146813000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr5:146811800-146813000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr5:146811800-146813600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:146811800-146813800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr5:146812000-146815400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr5:146812000-146815400	Weak transcription	Psoas Muscle	Psoas
36	chr5:146812000-146816200	Weak transcription	Brain Substantia Nigra	brain
37	chr5:146812000-146816400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr5:146812000-146816400	Weak transcription	Brain Hippocampus Middle	brain
39	chr5:146812000-146816800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr5:146812200-146813600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:146812200-146814000	Enhancers	Rectal Smooth Muscle	rectum
42	chr5:146812200-146815000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:146812200-146815200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:146812200-146815400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:146812200-146815400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:146812200-146815400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr5:146812200-146816400	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:146812200-146816600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr5:146812200-146816800	Weak transcription	Fetal Heart	heart
50	chr5:146812200-146818400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links