Variant report

Variant	rs17106761
Chromosome Location	chr5:146832341-146832342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12657083	0.84[AFR][1000 genomes]
rs12657176	0.82[AFR][1000 genomes]
rs17106743	0.82[YRI][hapmap];0.92[AFR][1000 genomes]
rs17106765	0.86[YRI][hapmap];0.93[AFR][1000 genomes]
rs17106767	0.80[YRI][hapmap]
rs57782659	0.89[AFR][1000 genomes]
rs58633172	0.82[AFR][1000 genomes]
rs73794725	0.85[AFR][1000 genomes]
rs73794726	0.83[AFR][1000 genomes]
rs73794728	0.88[AFR][1000 genomes]
rs73794730	0.88[AFR][1000 genomes]
rs73794763	0.83[AFR][1000 genomes]
rs7716469	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146830400-146832400	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr5:146830400-146834200	Active TSS	Fetal Brain Male	brain
3	chr5:146830600-146834000	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr5:146830800-146832600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:146830800-146834200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:146831000-146832800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:146831000-146834400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:146831000-146835000	Active TSS	Aorta	Aorta
9	chr5:146831200-146832400	Active TSS	Brain Angular Gyrus	brain
10	chr5:146831200-146834000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr5:146831200-146834200	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:146831200-146834200	Active TSS	Ovary	ovary
13	chr5:146831200-146834200	Active TSS	Rectal Smooth Muscle	rectum
14	chr5:146831200-146835000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr5:146831200-146835400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr5:146831400-146832400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:146831400-146832400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
18	chr5:146831400-146834000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr5:146831400-146834000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr5:146831400-146834200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:146831600-146832400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:146831600-146832600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr5:146831600-146832600	Active TSS	Brain Cingulate Gyrus	brain
24	chr5:146831600-146832600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
25	chr5:146831600-146832800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
26	chr5:146831600-146832800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
27	chr5:146831600-146832800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr5:146831600-146833000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
29	chr5:146831600-146833000	Bivalent/Poised TSS	Fetal Brain Female	brain
30	chr5:146831600-146833200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
31	chr5:146831600-146833200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
32	chr5:146831600-146834000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
33	chr5:146831600-146834000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
34	chr5:146831600-146834200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr5:146831600-146834200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:146831600-146834200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:146831800-146832400	Active TSS	Brain Anterior Caudate	brain
38	chr5:146831800-146832400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
39	chr5:146831800-146832400	Flanking Active TSS	Placenta Amnion	Placenta Amnion
40	chr5:146831800-146832800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
41	chr5:146831800-146832800	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr5:146831800-146832800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
43	chr5:146831800-146833000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
44	chr5:146831800-146833200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr5:146831800-146833200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
46	chr5:146831800-146833400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
47	chr5:146831800-146834000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:146831800-146834000	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr5:146831800-146834000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr5:146831800-146834200	Active TSS	Colon Smooth Muscle	Colon

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