Variant report

Variant	rs17106765
Chromosome Location	chr5:146834713-146834714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:146834436-146835111	MCF10A-Er-Src	breast:	n/a	n/a
2	MXI1	chr5:146832178-146834895	IMR90	lung:	n/a	chr5:146834252-146834261 chr5:146832595-146832604

Variant related genes	Relation type
DPYSL3	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12657083	0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs12657176	0.89[AFR][1000 genomes]
rs17106743	0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106761	0.86[YRI][hapmap];0.93[AFR][1000 genomes]
rs57782659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58633172	0.88[AFR][1000 genomes]
rs73794725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794726	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73794763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7716469	0.89[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146831000-146835000	Active TSS	Aorta	Aorta
2	chr5:146831200-146835000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr5:146831200-146835400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr5:146831800-146834800	Active TSS	Stomach Smooth Muscle	stomach
5	chr5:146831800-146835000	Active TSS	Right Atrium	heart
6	chr5:146831800-146835000	Active TSS	NHLF	lung
7	chr5:146832800-146835200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr5:146833800-146835000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:146833800-146835000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:146833800-146835400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr5:146834000-146835000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr5:146834000-146835000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr5:146834000-146835200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
14	chr5:146834000-146835200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr5:146834000-146835200	Flanking Active TSS	NH-A	brain
16	chr5:146834000-146835400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr5:146834000-146835400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr5:146834000-146835400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:146834000-146835600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:146834000-146835800	Enhancers	Fetal Heart	heart
21	chr5:146834000-146836000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr5:146834000-146836000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:146834200-146834800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:146834200-146834800	Enhancers	Brain Substantia Nigra	brain
25	chr5:146834200-146834800	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr5:146834200-146835000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr5:146834200-146835000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr5:146834200-146835000	Flanking Active TSS	Rectal Smooth Muscle	rectum
29	chr5:146834200-146835200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
30	chr5:146834200-146835200	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr5:146834200-146835400	Flanking Active TSS	Brain Germinal Matrix	brain
32	chr5:146834200-146835600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:146834200-146836200	Enhancers	Fetal Stomach	stomach
34	chr5:146834400-146834800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr5:146834400-146834800	Enhancers	Adipose Nuclei	Adipose
36	chr5:146834400-146834800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:146834400-146834800	Enhancers	Fetal Muscle Leg	muscle
38	chr5:146834400-146834800	Enhancers	HUVEC	blood vessel
39	chr5:146834400-146835000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
40	chr5:146834400-146835000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
41	chr5:146834400-146835200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:146834400-146835400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:146834400-146835400	Weak transcription	Left Ventricle	heart
44	chr5:146834400-146835600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr5:146834400-146835600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:146834400-146835600	Enhancers	Brain Hippocampus Middle	brain
47	chr5:146834400-146835800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr5:146834400-146835800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr5:146834400-146835800	Enhancers	Brain Angular Gyrus	brain
50	chr5:146834400-146835800	Enhancers	Brain Cingulate Gyrus	brain

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