Variant report

Variant	rs17106958
Chromosome Location	chr5:147008749-147008750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147008529..147009229-chr5:147054049..147054978,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10037567	0.94[AFR][1000 genomes]
rs10038789	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039022	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040051	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10040153	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10040261	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10044473	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10045077	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052305	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10053816	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10070469	0.85[AFR][1000 genomes]
rs11167995	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11543576	0.81[AFR][1000 genomes]
rs11950383	1.00[EUR][1000 genomes]
rs11952675	1.00[EUR][1000 genomes]
rs11960473	1.00[EUR][1000 genomes]
rs12654982	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12657616	0.86[AFR][1000 genomes]
rs13187867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1368362	0.87[AFR][1000 genomes]
rs1432848	1.00[EUR][1000 genomes]
rs17106942	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106944	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106946	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106961	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17106975	0.81[AFR][1000 genomes]
rs17107047	1.00[EUR][1000 genomes]
rs17107095	1.00[AMR][1000 genomes]
rs1864963	1.00[EUR][1000 genomes]
rs1897560	1.00[EUR][1000 genomes]
rs2400345	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763087	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3763091	0.87[AFR][1000 genomes]
rs3763095	0.82[AFR][1000 genomes]
rs3765008	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705041	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705178	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705180	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705182	1.00[EUR][1000 genomes]
rs4705183	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4705184	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4705185	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57435233	1.00[EUR][1000 genomes]
rs58292951	0.87[AFR][1000 genomes]
rs58633172	1.00[EUR][1000 genomes]
rs59260415	0.87[AFR][1000 genomes]
rs59481656	1.00[EUR][1000 genomes]
rs59967655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580469	1.00[EUR][1000 genomes]
rs6580479	0.85[AMR][1000 genomes]
rs6580481	0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580482	0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580483	0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6580484	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580485	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580486	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580487	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580488	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580489	0.94[AFR][1000 genomes]
rs6580490	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6580491	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6859847	1.00[EUR][1000 genomes]
rs6861316	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870396	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6871278	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6880748	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6881661	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6883497	1.00[EUR][1000 genomes]
rs73268103	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268104	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268117	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268122	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268130	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268132	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73268134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73268145	1.00[EUR][1000 genomes]
rs73268147	0.82[AFR][1000 genomes]
rs73268168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270115	1.00[EUR][1000 genomes]
rs73270116	1.00[EUR][1000 genomes]
rs73270118	1.00[EUR][1000 genomes]
rs73270121	1.00[EUR][1000 genomes]
rs73270124	1.00[EUR][1000 genomes]
rs7443154	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443158	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7443883	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7444805	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7446754	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447099	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7447317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7448588	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7449194	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7700567	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7706268	0.87[AFR][1000 genomes]
rs7707600	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7709473	1.00[EUR][1000 genomes]
rs7710371	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713552	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713571	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7713582	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7715897	1.00[EUR][1000 genomes]
rs7728938	0.84[AFR][1000 genomes]
rs7734698	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736889	1.00[EUR][1000 genomes]
rs9325046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9686374	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146977400-147012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:146990200-147015400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:146991400-147014600	Weak transcription	Fetal Stomach	stomach
7	chr5:146991400-147022800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:146992000-147012200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:146992200-147013000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:146992400-147015600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:146994200-147015800	Weak transcription	Primary B cells from cord blood	blood
12	chr5:146995200-147015200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:146995200-147015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:146995800-147015200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:146995800-147020200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr5:146997600-147015600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:146997600-147018600	Weak transcription	Fetal Brain Male	brain
18	chr5:146998000-147015200	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:146999200-147017800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:146999400-147025400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr5:146999600-147010800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:146999800-147019800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:147001000-147011200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:147001800-147010200	Strong transcription	Fetal Brain Female	brain
25	chr5:147002000-147010400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:147002200-147009600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:147002200-147015400	Weak transcription	Brain Angular Gyrus	brain
28	chr5:147002600-147012000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:147003400-147009000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:147003600-147008800	Weak transcription	Thymus	Thymus
31	chr5:147004800-147009400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:147006400-147008800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr5:147006600-147012000	Weak transcription	Brain Substantia Nigra	brain
34	chr5:147006600-147022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:147006800-147008800	Weak transcription	Primary T cells from cord blood	blood
36	chr5:147006800-147015000	Weak transcription	Brain Germinal Matrix	brain
37	chr5:147006800-147025200	Weak transcription	Fetal Intestine Small	intestine
38	chr5:147007000-147009000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:147007000-147015400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr5:147007200-147018200	Weak transcription	Fetal Thymus	thymus
41	chr5:147007800-147009400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:147007800-147018600	Weak transcription	Fetal Lung	lung
43	chr5:147008000-147009000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:147008000-147009600	Strong transcription	Brain Anterior Caudate	brain
45	chr5:147008000-147010400	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr5:147008200-147009400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:147008200-147009400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr5:147008200-147013000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr5:147008400-147010200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:147008400-147012400	Weak transcription	Liver	Liver

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