Variant report
| Variant | rs6580486 |
|---|---|
| Chromosome Location | chr5:146976592-146976593 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:146957000-146996200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr5:146957800-147038000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 3 | chr5:146967400-146990400 | Weak transcription | Fetal Brain Male | brain |
| 4 | chr5:146969600-146984000 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 5 | chr5:146969600-146989800 | Weak transcription | Brain Cingulate Gyrus | brain |
| 6 | chr5:146970000-146977200 | Strong transcription | Cortex derived primary cultured neurospheres | brain |
| 7 | chr5:146970400-146976800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 8 | chr5:146970600-146982600 | Weak transcription | Primary hematopoietic stem cells | blood |
| 9 | chr5:146970600-146993000 | Weak transcription | Brain Angular Gyrus | brain |
| 10 | chr5:146970800-146984200 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 11 | chr5:146971000-146984200 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 12 | chr5:146971200-146979200 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 13 | chr5:146971200-146990000 | Weak transcription | Brain Anterior Caudate | brain |
| 14 | chr5:146971200-146990800 | Weak transcription | Thymus | Thymus |
| 15 | chr5:146971600-146984200 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 16 | chr5:146972000-146978000 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 17 | chr5:146972200-146983200 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 18 | chr5:146972600-146981400 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 19 | chr5:146972800-146990400 | Weak transcription | Brain Hippocampus Middle | brain |
| 20 | chr5:146973400-146991000 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 21 | chr5:146973600-146994800 | Weak transcription | Primary T cells fromperipheralblood | blood |
| 22 | chr5:146974000-146990400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 23 | chr5:146974200-146977600 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 24 | chr5:146974400-146990000 | Weak transcription | Fetal Brain Female | brain |
| 25 | chr5:146974400-146990200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 26 | chr5:146974800-146980800 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 27 | chr5:146974800-146992600 | Weak transcription | Fetal Lung | lung |
| 28 | chr5:146975000-146977400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 29 | chr5:146975000-146988400 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 30 | chr5:146975000-146989800 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 31 | chr5:146975200-146977800 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 32 | chr5:146975200-146989600 | Weak transcription | Brain Substantia Nigra | brain |
| 33 | chr5:146975200-146990000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 34 | chr5:146975800-146978000 | Strong transcription | Brain Inferior Temporal Lobe | brain |
| 35 | chr5:146975800-146979000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 36 | chr5:146976000-146977200 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 37 | chr5:146976000-146990000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 38 | chr5:146976200-146980400 | Weak transcription | Brain Germinal Matrix | brain |
| 39 | chr5:146976200-146991200 | Weak transcription | Primary T cells from cord blood | blood |
