Variant report

Variant	rs17106975
Chromosome Location	chr5:147014114-147014115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10035605	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10040051	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040261	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10044761	0.90[ASN][1000 genomes]
rs10052305	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10053816	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10070469	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11167995	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654361	0.83[ASN][1000 genomes]
rs12654501	0.96[ASN][1000 genomes]
rs12654833	0.92[ASN][1000 genomes]
rs12654982	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12655190	0.96[ASN][1000 genomes]
rs12655622	0.96[ASN][1000 genomes]
rs12656104	0.86[ASN][1000 genomes]
rs12657616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657989	0.96[ASN][1000 genomes]
rs12659844	0.92[ASN][1000 genomes]
rs13172946	0.83[ASN][1000 genomes]
rs1368362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106944	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106946	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106958	0.81[AFR][1000 genomes]
rs17106961	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17495305	0.91[JPT][hapmap]
rs17561036	0.81[ASN][1000 genomes]
rs2053050	0.83[ASN][1000 genomes]
rs2053052	0.83[ASN][1000 genomes]
rs2304037	0.96[ASN][1000 genomes]
rs2304038	0.96[ASN][1000 genomes]
rs2304039	0.96[ASN][1000 genomes]
rs2400345	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35285805	0.83[ASN][1000 genomes]
rs3749722	0.92[ASN][1000 genomes]
rs3763087	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763088	0.96[ASN][1000 genomes]
rs3763089	0.96[ASN][1000 genomes]
rs3763090	0.96[ASN][1000 genomes]
rs3763091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3763095	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3765007	0.96[ASN][1000 genomes]
rs3765008	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705041	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4705178	0.81[AFR][1000 genomes]
rs4705180	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705184	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705189	0.82[ASN][1000 genomes]
rs58292951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59260415	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59967655	0.82[AFR][1000 genomes]
rs6421163	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580476	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6580479	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580481	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580482	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580483	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580488	0.85[AFR][1000 genomes]
rs6580490	0.85[AFR][1000 genomes]
rs6867185	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6870396	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871278	0.82[AFR][1000 genomes]
rs6880748	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6881661	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73266286	0.95[ASN][1000 genomes]
rs73268103	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268104	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268117	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73268122	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268130	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268132	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73268134	0.81[AFR][1000 genomes]
rs73268147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73268168	0.82[AFR][1000 genomes]
rs7443154	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7443158	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7444805	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7448588	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7449194	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7700567	0.81[AFR][1000 genomes]
rs7706268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7707600	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7710371	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7713552	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7713571	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7713582	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7715897	0.94[AFR][1000 genomes]
rs7728938	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7734698	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9325046	0.81[AFR][1000 genomes]
rs9686374	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs999953	0.81[YRI][hapmap]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146957800-147038000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:146988000-147015000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:146990200-147015400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:146990600-147022600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:146991400-147014600	Weak transcription	Fetal Stomach	stomach
6	chr5:146991400-147022800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:146992400-147015600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:146994200-147015800	Weak transcription	Primary B cells from cord blood	blood
9	chr5:146995200-147015200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:146995200-147015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:146995800-147015200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr5:146995800-147020200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:146997600-147015600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:146997600-147018600	Weak transcription	Fetal Brain Male	brain
15	chr5:146998000-147015200	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:146999200-147017800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:146999400-147025400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:146999800-147019800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:147002200-147015400	Weak transcription	Brain Angular Gyrus	brain
20	chr5:147006600-147022400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:147006800-147015000	Weak transcription	Brain Germinal Matrix	brain
22	chr5:147006800-147025200	Weak transcription	Fetal Intestine Small	intestine
23	chr5:147007000-147015400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr5:147007200-147018200	Weak transcription	Fetal Thymus	thymus
25	chr5:147007800-147018600	Weak transcription	Fetal Lung	lung
26	chr5:147008400-147020400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:147009200-147015400	Weak transcription	Primary T cells from cord blood	blood
28	chr5:147009200-147019400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:147009400-147016000	Weak transcription	Thymus	Thymus
30	chr5:147009400-147027200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:147009400-147033200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:147009600-147015400	Weak transcription	Brain Anterior Caudate	brain
33	chr5:147009600-147015600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr5:147009800-147051200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:147010400-147015200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:147010800-147028600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr5:147011200-147014200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr5:147012000-147017000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr5:147012400-147016200	Weak transcription	Brain Substantia Nigra	brain
40	chr5:147013000-147014200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:147013000-147015200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr5:147013000-147027400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr5:147013000-147030200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:147013000-147038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:147013200-147015000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr5:147013200-147015400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr5:147013200-147015400	Weak transcription	Fetal Brain Female	brain
48	chr5:147013200-147024600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr5:147013400-147015200	Weak transcription	Liver	Liver
50	chr5:147013600-147025800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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