The 2.0 version of rSNPBase

Variant report

Variant rs2304039
Chromosome Location chr5:147000673-147000674
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:146957800-147038000 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr5:146977400-147012200 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr5:146987800-147001000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
4 chr5:146988000-147015000 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr5:146989000-147003000 Weak transcription Fetal Muscle Trunk muscle
6 chr5:146990200-147015400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr5:146990400-147004000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
8 chr5:146990600-147022600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr5:146990800-147008600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr5:146991400-147014600 Weak transcription Fetal Stomach stomach
11 chr5:146991400-147022800 Weak transcription Stomach Smooth Muscle stomach
12 chr5:146991800-147001000 Strong transcription HUES64 Cell Line embryonic stem cell
13 chr5:146991800-147002400 Weak transcription Thymus Thymus
14 chr5:146992000-147012200 Weak transcription iPS-15b Cell Line embryonic stem cell
15 chr5:146992200-147013000 Strong transcription iPS-20b Cell Line embryonic stem cell
16 chr5:146992400-147015600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr5:146992800-147000800 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr5:146993400-147003600 Weak transcription NH-A brain
19 chr5:146994200-147015800 Weak transcription Primary B cells from cord blood blood
20 chr5:146995200-147015200 Weak transcription H9 Cell Line embryonic stem cell
21 chr5:146995200-147015200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr5:146995800-147015200 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr5:146995800-147020200 Weak transcription Primary T cells fromperipheralblood blood
24 chr5:146997400-147005000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr5:146997600-147000800 Weak transcription Fetal Brain Female brain
26 chr5:146997600-147002200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr5:146997600-147004800 Weak transcription Brain Anterior Caudate brain
28 chr5:146997600-147005800 Weak transcription Brain Inferior Temporal Lobe brain
29 chr5:146997600-147006000 Weak transcription Brain Substantia Nigra brain
30 chr5:146997600-147015600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr5:146997600-147018600 Weak transcription Fetal Brain Male brain
32 chr5:146997800-147004800 Weak transcription Brain Cingulate Gyrus brain
33 chr5:146997800-147006200 Weak transcription Fetal Thymus thymus
34 chr5:146998000-147007800 Weak transcription Liver Liver
35 chr5:146998000-147015200 Weak transcription Brain Hippocampus Middle brain
36 chr5:146998200-147002400 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr5:146999200-147017800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr5:146999400-147002000 Weak transcription Brain Angular Gyrus brain
39 chr5:146999400-147003200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:146999400-147025400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr5:146999600-147010800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr5:146999800-147002000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr5:146999800-147004000 Weak transcription Brain Germinal Matrix brain
44 chr5:146999800-147019800 Weak transcription Primary hematopoietic stem cells blood
45 chr5:147000000-147002200 Strong transcription iPS-18 Cell Line embryonic stem cell
46 chr5:147000000-147008000 Weak transcription H1 Cell Line embryonic stem cell
47 chr5:147000200-147001000 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr5:147000400-147002000 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr5:147000600-147001000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr5:147000600-147001200 Strong transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015