Variant report
| Variant | rs57435233 |
|---|---|
| Chromosome Location | chr5:146924413-146924414 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:61)
| rs_ID | r2[population] |
|---|---|
| rs10038789 | 1.00[EUR][1000 genomes] |
| rs10039022 | 1.00[EUR][1000 genomes] |
| rs10040153 | 1.00[EUR][1000 genomes] |
| rs10044473 | 1.00[EUR][1000 genomes] |
| rs10463278 | 0.82[ASN][1000 genomes] |
| rs11950383 | 1.00[EUR][1000 genomes] |
| rs11950394 | 1.00[EUR][1000 genomes] |
| rs11952675 | 1.00[EUR][1000 genomes] |
| rs11960473 | 1.00[EUR][1000 genomes] |
| rs13187867 | 1.00[EUR][1000 genomes] |
| rs1432848 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1594660 | 0.88[ASN][1000 genomes] |
| rs17106942 | 1.00[EUR][1000 genomes] |
| rs17106958 | 1.00[EUR][1000 genomes] |
| rs17107047 | 1.00[EUR][1000 genomes] |
| rs1864963 | 1.00[EUR][1000 genomes] |
| rs1897560 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34055697 | 0.88[ASN][1000 genomes] |
| rs34506199 | 0.88[ASN][1000 genomes] |
| rs35983616 | 0.88[ASN][1000 genomes] |
| rs41506250 | 0.82[ASN][1000 genomes] |
| rs4705178 | 1.00[EUR][1000 genomes] |
| rs4705182 | 1.00[EUR][1000 genomes] |
| rs4705183 | 1.00[EUR][1000 genomes] |
| rs58633172 | 1.00[EUR][1000 genomes] |
| rs59481656 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60449711 | 0.91[ASN][1000 genomes] |
| rs6580469 | 1.00[EUR][1000 genomes] |
| rs6580484 | 1.00[EUR][1000 genomes] |
| rs6580487 | 1.00[EUR][1000 genomes] |
| rs6580488 | 1.00[EUR][1000 genomes] |
| rs6580490 | 1.00[EUR][1000 genomes] |
| rs66795022 | 0.82[ASN][1000 genomes] |
| rs6859847 | 1.00[EUR][1000 genomes] |
| rs6861316 | 1.00[EUR][1000 genomes] |
| rs6872762 | 0.85[ASN][1000 genomes] |
| rs6877330 | 0.82[ASN][1000 genomes] |
| rs6880281 | 1.00[EUR][1000 genomes] |
| rs6883497 | 1.00[EUR][1000 genomes] |
| rs73268106 | 1.00[EUR][1000 genomes] |
| rs73268113 | 1.00[EUR][1000 genomes] |
| rs73268120 | 1.00[EUR][1000 genomes] |
| rs73268145 | 1.00[EUR][1000 genomes] |
| rs73270115 | 1.00[EUR][1000 genomes] |
| rs73270116 | 1.00[EUR][1000 genomes] |
| rs73270118 | 1.00[EUR][1000 genomes] |
| rs73270121 | 1.00[EUR][1000 genomes] |
| rs73270124 | 1.00[EUR][1000 genomes] |
| rs7443883 | 1.00[EUR][1000 genomes] |
| rs7446754 | 1.00[EUR][1000 genomes] |
| rs7447099 | 1.00[EUR][1000 genomes] |
| rs7447317 | 1.00[EUR][1000 genomes] |
| rs7700567 | 1.00[EUR][1000 genomes] |
| rs7709473 | 1.00[EUR][1000 genomes] |
| rs7710371 | 1.00[EUR][1000 genomes] |
| rs7713359 | 0.82[ASN][1000 genomes] |
| rs7715897 | 1.00[EUR][1000 genomes] |
| rs7715946 | 0.81[ASN][1000 genomes] |
| rs7734698 | 1.00[EUR][1000 genomes] |
| rs7736889 | 1.00[EUR][1000 genomes] |
| rs9325046 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:146915600-146933400 | Weak transcription | Ovary | ovary |
| 2 | chr5:146923800-146925000 | Enhancers | HUVEC | blood vessel |
| 3 | chr5:146924000-146924600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 4 | chr5:146924200-146924600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
